Summary.html from eXtensible Genome Data Broker at Krugle

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<HTML><HEAD><TITLE>GeneSeqer Result Summary Page</TITLE></HEAD><BODY><P>
	  <FORM METHOD=POST ACTION="http://www.plantgdb.org/cgi-bin/PlantGDB/GeneSeqer/processGShit.pl" target="_blank">
	 <input type="hidden" name="URL" value="http://www.plantgdb.org/cgi-bin/PlantGDB/GeneSeqer/PlantGDBgs.cgi">
	 <input type="hidden" name="CGIparameters" value="CGIdat">
	  <table border=0>
		<tr>	<td><INPUT TYPE="SUBMIT" VALUE="Select"> <SELECT NAME="SeqSelect">
			           <option value="All">All</option>
			           <option value="Checked">Checked</option>
			           </SELECT> <b>matching sequences</b> </td>
			<td><b>to</b> <SELECT NAME="Action">
                                <option value="display in FASTA format">display in FASTA format</option>
				<option value="Re-run GeneSeqer with selected sequences">re-run GeneSeqer with selected sequences</option>
                                </SELECT></td> 
			<td></td>
			<td> <a href="#AdvancedOptions">Or access other options at the bottom of this page such as sorting and screening</a></td>
		</tr>
	  </table>
	  <TABLE border=1><tr><th colspan=6>Query Sequence: AC137075 
	</th></tr><tr align=center>
		<td>Matching Sequence</td>
		<td>Species</td>
		<td align=center>
		<table border=1 width=100% cellpadding=0 cellspacing=0><tr align=center><td colspan=3>Matching Region</td></tr>
				<tr align=center><td>From-To</td><td>Alignment score</td><td>Coverage</td></tr>
		</table>
		</td>
		<td>Sequence Type</td><td>Member ESTs</td><td>Library Name</td></tr><tr><td rowspan=2 align=left><A NAME="AC137075-45000-50999"><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="32980476"> <a href="http://www.plantgdb.org/data.php?Seq_ID=32980476" target="_blank">32980476</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>45576-49500</td><td width=33%>0.712</td><td width=33%>0.806</td></tr></table></td><td rowspan=2 width=100 align=center>cDNA</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=32980476" target="_blank">32980476</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=2397&Text=LibrarySearch" target="_blank">Unknown</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="12698877"> <a href="http://www.plantgdb.org/data.php?Seq_ID=12698877" target="_blank">12698877</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>45614-49500</td><td width=33%>0.716</td><td width=33%>0.826</td></tr></table></td><td rowspan=2 width=100 align=center>cDNA</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=12698877" target="_blank">12698877</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=13113&Text=LibrarySearch" target="_blank">Unknown</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="29680389"> <a href="http://www.plantgdb.org/data.php?Seq_ID=29680389" target="_blank">29680389</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>46380-47955</td><td width=33%>0.730</td><td width=33%>0.717</td></tr></table></td><td rowspan=2 width=100 align=center>EST</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=29680389" target="_blank">29680389</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=945&Text=LibrarySearch" target="_blank">OSJNEe</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="27578307"> <a href="http://www.plantgdb.org/data.php?Seq_ID=27578307" target="_blank">27578307</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>48157-49227</td><td width=33%>0.771</td><td width=33%>0.888</td></tr></table></td><td rowspan=2 width=100 align=center>EST</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=27578307" target="_blank">27578307</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=648&Text=LibrarySearch" target="_blank">Rice cold stress germination cDNA library</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="32971490"> <a href="http://www.plantgdb.org/data.php?Seq_ID=32971490" target="_blank">32971490</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>48173-49500</td><td width=33%>0.770</td><td width=33%>0.788</td></tr></table></td><td rowspan=2 width=100 align=center>cDNA</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=32971490" target="_blank">32971490</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=2397&Text=LibrarySearch" target="_blank">Unknown</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="33382000"> <a href="http://www.plantgdb.org/data.php?Seq_ID=33382000" target="_blank">33382000</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>48238-49278</td><td width=33%>0.769</td><td width=33%>1.010</td></tr></table></td><td rowspan=2 width=100 align=center>EST</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=33382000" target="_blank">33382000</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=1157&Text=LibrarySearch" target="_blank">IR64-VI</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="14571346"> <a href="http://www.plantgdb.org/data.php?Seq_ID=14571346" target="_blank">14571346</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>48376-49238</td><td width=33%>0.777</td><td width=33%>0.995</td></tr></table></td><td rowspan=2 width=100 align=center>EST</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=14571346" target="_blank">14571346</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=163&Text=LibrarySearch" target="_blank">Differentially expressed cDNA libraries of BTH-treated/blast fungus-infected rice leaf tissues</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="29656473"> <a href="http://www.plantgdb.org/data.php?Seq_ID=29656473" target="_blank">29656473</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>48542-49500</td><td width=33%>0.777</td><td width=33%>0.763</td></tr></table></td><td rowspan=2 width=100 align=center>EST</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=29656473" target="_blank">29656473</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=943&Text=LibrarySearch" target="_blank">OSJNEc</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="29663931"> <a href="http://www.plantgdb.org/data.php?Seq_ID=29663931" target="_blank">29663931</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>48584-49500</td><td width=33%>0.764</td><td width=33%>0.758</td></tr></table></td><td rowspan=2 width=100 align=center>EST</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=29663931" target="_blank">29663931</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=944&Text=LibrarySearch" target="_blank">OSJNEd</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="2797925"> <a href="http://www.plantgdb.org/data.php?Seq_ID=2797925" target="_blank">2797925</a></td><td rowspan=2 align=right>Oryza sativa</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>48914-49329</td><td width=33%>0.734</td><td width=33%>0.961</td></tr></table></td><td rowspan=2 width=100 align=center>EST</td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=2797925" target="_blank">2797925</a></td><td> <a href="http://www.plantgdb.org/TextSearch.php?Type=Library&Library_ID=69&Text=LibrarySearch" target="_blank">Rice Immature Seed Lambda ZAPII cDNA Library</a></td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="AtPLC2"> <a href="http://www.plantgdb.org/data.php?Seq_ID=AtPLC2" target="_blank">AtPLC2</a></td><td rowspan=2 align=right>Unknown</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>46116-49492</td><td width=33%>0.567</td><td width=33%>1.024</td></tr></table></td><td rowspan=2 width=100 align=center> </td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=N/A" target="_blank">N/A</a></td><td>Unknown</td></tr><tr><td rowspan=2 align=left><INPUT TYPE="checkbox" NAME="SelectHits" VALUE="OsPLCa"> <a href="http://www.plantgdb.org/data.php?Seq_ID=OsPLCa" target="_blank">OsPLCa</a></td><td rowspan=2 align=right>Unknown</td><td rowspan=2 width=450 align=left><table border=0 width=100% cellpadding=0 cellspacing=0><tr align=center><td width=33%>46122-49492</td><td width=33%>1.000</td><td width=33%>1.000</td></tr></table></td><td rowspan=2 width=100 align=center> </td><tr><td><a href="http://www.plantgdb.org/data.php?Seq_ID=N/A" target="_blank">N/A</a></td><td>Unknown</td></tr><input type="hidden" name="AllHits" value="32980476:12698877:29680389:27578307:32971490:33382000:14571346:29656473:29663931:2797925:AtPLC2:OsPLCa"></TABLE></FORM></P><P><A NAME="AdvancedOptions">
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        <input type="hidden" name="GSoutputFile" value="/home/volker/public_html/PLC/NEW/gs_sorted-output-OsPLCa.html">
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        <input type="hidden" name="CGIparameters" value="CGIdat"><TABLE border=0>
                <TR><td><input type=submit value="Sort" name="SortSubmit"> on </td>
                    <td><select name="SortColumn">
                                <option value="minCoordinates">Position</option>
                                <option value="Score">Alignment score</option>
                                <option value="Coverage">Coverage</option>
                                <option value="Organism">Species</option> </select>
                    </td>
		<td>in <select name="SortOrder">
                                <option value="ASC">Ascending</option>
                                <option value="DESC">Descending</option>
                                </select>
		order
		</TR>
	</TABLE><input type=submit value="Screen" name="ScreenSubmit"> the hits (restricted to the species selected below) that match in the region <b>from</b> <input type="text" name="minCoordinates" size="20" value="starting position"> <b>to</b> <input type="text" name="maxCoordinates" size="20" value="ending position">
                        with similarity <b>score</b> <i>>=</i> <select name="Score"><option value="0">0.0</option><option value="1">1.00</option>
                                                        <option value="0.95">0.95</option>
                                                        <option value="0.9">0.90</option>
                                                        <option value="0.85">0.85</option>
                                                        <option value="0.8">0.80</option>
                                                        <option value="0.75">0.75</option>
                                                        <option value="0.7">0.70</option>
                                                        </select>
                      and <b>coverage</b> <i>>=</i> <select name="Coverage"><option value="0">0.0</option><option value="1">1.00</option>
                                                        <option value="0.95">0.95</option>
                                                        <option value="0.9">0.90</option>
                                                        <option value="0.85">0.85</option>
                                                        <option value="0.8">0.80</option>
                                                        <option value="0.75">0.75</option>
                                                        <option value="0.7">0.70</option>
                                                        </select>
 
			<UL>
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				<i>Shortcut</i>:<UL><LI><input type='checkbox' name='organism' value='All Species'> All Species</LI></UL>
			</LI>
			<LI><i>Individual species</i>:<UL><LI><input type='checkbox' name='organism' value='Oryza sativa'> Oryza sativa &nbsp<input type='checkbox' name='organism' value='Unknown'> Unknown &nbsp</UL></LI></UL></TABLE></FORM></P>
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