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<center><h3><a href="http://www.plantgdb.org/~volker/PLC/OsPLCb/Summary.html" target="_blank">Click here to access the result summary and navigation page</a></h3></center><br>GeneSeqer. Version of May 5, 2004.
Date run: Mon Aug 9 09:39:21 2004
(Bayesian) Splice site model (species): Arabidopsis thaliana
Fast search parameters: MinMatchLen 12, MinQualityHSP 12, MinQualityCHAIN 30.
GenBank file: AC129720
________________________________________________________________________________
<A NAME="AC129720-69000-75999"></A>
Sequence 1: <A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=Nucleotide&term=AC129720&doptcmdl=GenBank" TARGET="NUCLEOTIDE SEQUENCE SEARCH">AC129720</A>, from 69001 to 76000.
... started at: Mon Aug 9 09:39:21 2004
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST library file: LIBestB; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 13
EST library file: LIBestB; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 4
<A NAME="PGS1@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 1 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=32974942" TARGET="NUCLEOTIDE SEQUENCE SEARCH">32974942+</A>)
1 GGGTCATCAC GGATCAAGAA GAAGATTAGC TTAGCTAGCT AAAAAGTAAG TAGCCGTGCG
61 AAGTCGCCGG CGGTGATCAG CCGGCGATGA CGACGTACAG GGTGTGCTGC TTCCTGCGGC
121 GGTTCAGGGC GGCGTCGAAC GAGCCGTCGG AGGAGCTCGG CGACGTGTTC CAGGCGTACG
181 CCGACGGCGG CGGCGGCGTG ATGGGGGAGG AGGCGCTGAG GCGGTTCCTC CGGGAGGTGC
241 AGGGGGAGGC CGCCGGCGGC GGCGACGACG AGCTGGAGGC GACGGCGAGG GAGGTGATGG
301 CCTTCGCGGC GGAGCAGAGG CTGCTCAGGA AGGGCGGCGC CGCTGCCGCC GGCGGCGGGC
361 TCACCGTCGA GGGCTTCCAC CGCCGGCTGT GCAGCGACGC CAACGCTGCA CTGGATCCTC
421 AGAAACGGGT ATATCAAGAC ATGGGATTGC CTCTGTCACA CTACTTCATC TACACGGGGC
481 ACAACTCATA CCTGACGGGG AACCAGCTGA GCAGCGGGTG CAGCGAGGTG CCCATCGTGA
541 AGGCCCTCCA CGACGGCGTC CGTGTCATCG AGCTCGACCT CTGGCCCAAC GCTGCCAAGG
601 ACGCCGTCGA GGTCCTCCAC GGCAGGACGC TGACATCGCC AGTGGGTCTG ATGAAATGCC
661 TTGAGGCCAT CAGGGAGTAC GCGTTCGTCG CCTCCCCTTA CCCCGTCATC CTCACCCTCG
721 AAGATCACCT CACTCCCGAC CTCCAATCCA AAGTCGCCAA GATGATCAAG GAGACGTTCG
781 GTGACATGCT CTACGTCTCT GAAACTGAGA ACATGGCGGA ATTCCCTTCG CCGGACGAGC
841 TCAAGGGGAA GATCATCGTG TCGACGAAGC CGCCCAAGGA GTACCTCCAG ACCAAGAACG
901 ACGCCGACGC CGACGAGGCC GGCGTCTGGG GCGAGGAGAT CACCGACGAC AAGGTGGCGG
961 CGACGGCGAT GACGACAGAA GAGAAATGCG CGGCGGCGGA GGAAGCAGTC GCCGCCGCCG
1021 CCGTCGACGA GGAGATGCAG GAGGCCGAGA CGGACAAGAA GACGCAGCAC GGGGTGGACA
1081 ACGAGTACAG GCGCCTCATC GCCATCCCTC TGACAAGAAG AAAGCACGAC ATGGATCAGG
1141 ACCTCAAGGT CGATCCCGAC ATGGTGACGC GCCTCAGCCT CGGGGAGAAG GCCTACGAGA
1201 AGGCCATTGT CACCCATGGA GCTCACATTA TCAGGTTTAC GCAGAGGAAA TTGCTGAGGA
1261 TATTCCCTCG GTCGACGCGC ATTACGTCTT CGAATTATAA TCCTTTGATG GGTTGGAGGT
1321 ATGGAGTTCA GATGGTTGCA GCAAACATGC AGGGCCATGG AAGAAAGCTG TGGCTGACTC
1381 AGGGGATGTT CCGAGCAAAC GGCGGTTGCG GTTACGTCAA AAAGCCTGAT ATTCTGATGA
1441 ACAACGATCC AGATAAACTG TTTGATCCTA CATCCAAACT ACCAGTAAAG ACAAGACTAA
1501 AGGTGACGGT GTACATGGGA GACGGATGGC GATTCGACTT CCGCAAGACA CATTTCGACA
1561 AATGCTCACC CCCAGACTTC TATGCAAGGG TGGGTATAGC CGGAGTAGAA GCAGACACGA
1621 GGATGGAGCA GACGAAGGTG AAGATGGACA CGTGGATTCC GGCATGGGAT CACGAGTTCG
1681 AGTTCCCGTT GAGCGTGCCG GAGCTGGCGC TGCTCCGGGT GGAGGTGCAC GAGTCCGACA
1741 ACCACCAGAA GGACGACTTC GGCGGGCAGA CCTGCCTGCC GGTGTGGGAG CTCCGGCGAG
1801 GCATCCGCTC CGTCAGGCTC TGCGACCACC GCGGCGAGCC CCTCCGCTCC GTCAAGCTCC
1861 TCATGCGCTT CGACTTCACC TGACTACTCC ATCTTCTTCT TCATCATCGT CATCGTCTTA
1921 GTAGTAGTAG TTCCATGTAT GATATCATGA GGGATGAAGC ATTGATCGTA CTTTCTCCGT
1981 CCCGAAATAT AGCAATGTAG GATTAGATGG AAACATCTTA ATACTACGAA TCTGGATATG
2041 TCCTATCTGG TTCTGGTTTG CTATGTTTTA GGACGAATAT AGTACATAAA ATTTTAGAAG
2101 TTTTGTTTTA AAAAAGAATA AATTTTGTGC GAAACGGAAG GTGTGATTGT ACATTTTGTA
2161 CGTACATTGT TTGTTGTTGA TTAATAAACG TGTTAATAAA AGAGGGAAGG ATTCTTTT
Predicted gene structure (within gDNA segment 69318 to 75549):
Exon 1 69623 70049 ( 427 n); cDNA 2 428 ( 427 n); score: 0.998
Intron 1 70050 71525 (1476 n); Pd: 1.000 (s: 0.98), Pa: 0.978 (s: 1.00)
Exon 2 71526 71722 ( 197 n); cDNA 429 625 ( 197 n); score: 1.000
Intron 2 71723 72555 ( 833 n); Pd: 0.872 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 3 72556 72691 ( 136 n); cDNA 626 761 ( 136 n); score: 1.000
Intron 3 72692 72785 ( 94 n); Pd: 0.704 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 4 72786 73258 ( 473 n); cDNA 762 1234 ( 473 n); score: 1.000
Intron 4 73259 73366 ( 108 n); Pd: 0.995 (s: 1.00), Pa: 0.971 (s: 1.00)
Exon 5 73367 73484 ( 118 n); cDNA 1235 1352 ( 118 n); score: 1.000
Intron 5 73485 73841 ( 357 n); Pd: 0.997 (s: 1.00), Pa: 0.992 (s: 1.00)
Exon 6 73842 73991 ( 150 n); cDNA 1353 1502 ( 150 n); score: 1.000
Intron 6 73992 74118 ( 127 n); Pd: 0.959 (s: 1.00), Pa: 0.811 (s: 1.00)
Exon 7 74119 74205 ( 87 n); cDNA 1503 1589 ( 87 n); score: 1.000
Intron 7 74206 74615 ( 410 n); Pd: 0.996 (s: 1.00), Pa: 0.382 (s: 1.00)
Exon 8 74616 75244 ( 629 n); cDNA 1590 2218 ( 629 n); score: 1.000
MATCH AC129720+ 32974942+ 1.000 2217 1.000 C
PGS_AC129720+_32974942+ (69623 70049,71526 71722,72556 72691,72786 73258,73367 73484,73842 73991,74119 74205,74616 75244)
Alignment (genomic DNA sequence = upper lines):
GGTCATCACG GATCAAGAAG AAGATTAGCT TAGCTAGCTA AAAAGTAAGT AGCCGTGCGA 69682
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTCATCACG GATCAAGAAG AAGATTAGCT TAGCTAGCTA AAAAGTAAGT AGCCGTGCGA 61
AGTCGCCGGC GGTGATCAGC CGGCGATGAC GACGTACAGG GTGTGCTGCT TCCTGCGGCG 69742
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGTCGCCGGC GGTGATCAGC CGGCGATGAC GACGTACAGG GTGTGCTGCT TCCTGCGGCG 121
GTTCAGGGCG GCGTCGAACG AGCCGTCGGA GGAGCTCGGC GACGTGTTCC AGGCGTACGC 69802
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTCAGGGCG GCGTCGAACG AGCCGTCGGA GGAGCTCGGC GACGTGTTCC AGGCGTACGC 181
CGACGGCGGC GGCGGCGTGA TGGGGGAGGA GGCGCTGAGG CGGTTCCTCC GGGAGGTGCA 69862
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGACGGCGGC GGCGGCGTGA TGGGGGAGGA GGCGCTGAGG CGGTTCCTCC GGGAGGTGCA 241
GGGGGAGGCC GCCGGCGGCG GCGACGACGA GCTGGAGGCG ACGGCGAGGG AGGTGATGGC 69922
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGGGGAGGCC GCCGGCGGCG GCGACGACGA GCTGGAGGCG ACGGCGAGGG AGGTGATGGC 301
CTTCGCGGCG GAGCAGAGGC TGCTCAGGAA GGGCGGCGCC GCTGCCGCCG GCGGCGGGCT 69982
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTCGCGGCG GAGCAGAGGC TGCTCAGGAA GGGCGGCGCC GCTGCCGCCG GCGGCGGGCT 361
CACCGTCGAG GGCTTCCACC GCTGGCTGTG CAGCGACGCC AACGCTGCAC TGGATCCTCA 70042
|||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||||||||
CACCGTCGAG GGCTTCCACC GCCGGCTGTG CAGCGACGCC AACGCTGCAC TGGATCCTCA 421
GAAACGGGTA CGTACTTAAT TTACGTGATT AGTTAGCTAA TTAAACTCGT AATTAACACC 70102
|||||||
GAAACGG... .......... .......... .......... .......... .......... 428
TAATTAATCA TGATTATGCA TGGATTCGAC GATCTCTTCC TCCATCATAT AGCTTAATTA 70162
.......... .......... .......... .......... .......... .......... 428
GCTACTCTTG TGTTCAATAG ATACTACTAT TAACAAATGA GTGTGAAATC AATCTGTAAT 70222
.......... .......... .......... .......... .......... .......... 428
AATAATAATA ATAATAATAA TAATAATAAT AATAATAATA ATAATAATAA TAATAATAAT 70282
.......... .......... .......... .......... .......... .......... 428
AATTGATAAT AATGCTCCTC CTATGCTTTT CCTTTTTTTT TTACGGAAGA ATGTAGAGTA 70342
.......... .......... .......... .......... .......... .......... 428
GGCTTTACCT TATAGTCATT TCATTAATAG AAATGAGGTT TACAGATTAC ATATTAGGTG 70402
.......... .......... .......... .......... .......... .......... 428
TGGGAATCAT CAGAGAGAAA AAAAGAACAA AAAGCAGAAC AAACCAAAAC AGAAAAAGAG 70462
.......... .......... .......... .......... .......... .......... 428
ATAATTTACA GATATATGTA CATGCCTATG TTCTTCTATA GAAACTATAT CCCAGTTACT 70522
.......... .......... .......... .......... .......... .......... 428
TATTATGCGT ATATATATAA GGAATTAATT CACATTCAGG AGCAACTAGG CAAGGCCTTC 70582
.......... .......... .......... .......... .......... .......... 428
ATCGTCAGAT ACTGTACATG GATAATCATA CAGAGGCTAA CCATGGCCAT GCAACCTAGG 70642
.......... .......... .......... .......... .......... .......... 428
GACCATGGAT GAGCTCTCAC AAGCGCCTCC AAAACAAAAG AAGATAAGGT CCCTAGTCAT 70702
.......... .......... .......... .......... .......... .......... 428
ATGAGAATGG AGAACAGGTC GATGATATTG GAATAAGTGA ATTCCCGTCT TTCATTATCA 70762
.......... .......... .......... .......... .......... .......... 428
GTCTAAATTT TTTATTCAAA CCAATTGACG CATGCAACTC AATATAGTAT CAGTCCCAAG 70822
.......... .......... .......... .......... .......... .......... 428
TTTAAACCCT AGTTGGCATA TAATTAAATA AAAAATACAA CATATTTCTA TCTGAGGTTT 70882
.......... .......... .......... .......... .......... .......... 428
GAGGGGACCT CGTGTGAAGG GAAGTGTTGA AATATAAGTG AATTGTCCGT TTTTCTTCAT 70942
.......... .......... .......... .......... .......... .......... 428
CAGCTTAAAC TTTTGGGTTA AACTGTTCGG GATGTATTAC ACAATAGTGA AAAGAATCTG 71002
.......... .......... .......... .......... .......... .......... 428
TGTATACAAC TCAATGGTGT GAAGGAGAAA TTGGTCGAGT CTATAGAGGG GTCGGTGCGT 71062
.......... .......... .......... .......... .......... .......... 428
ACAACTCAAT CGTGGGAAGT GAAGAGGAGG TCGGTGTGTA CAACTCAACA GTGGGAAGTG 71122
.......... .......... .......... .......... .......... .......... 428
AAGAGGGAGG TTGGTGTGTA CAACTCTATT TTTTTAGATA AAGACAACTC AATTAATAGT 71182
.......... .......... .......... .......... .......... .......... 428
GGGAAGTAGG GGGGGGGGGA AGGAGGGGGG GATCGGTGTG TACAATTCAA TAGTGTAGAA 71242
.......... .......... .......... .......... .......... .......... 428
GGGGAAATTC AGATGAGCAT GTTGCTGCCC ATGCGCAGAG CTACGAGAAG ACTGCTTTTG 71302
.......... .......... .......... .......... .......... .......... 428
CGGTTTCGCC TAGGACACAT GCCATGTGAA AATATCAAGT CCTTTCGGTG AGCGAAGGAC 71362
.......... .......... .......... .......... .......... .......... 428
CGAAGTCCTA CATAACTTTT TCCCTTGTTT GGTACTCGAT AAACCAAAAC CAAACCGTAA 71422
.......... .......... .......... .......... .......... .......... 428
AAACTGAATA TATATTCATG TAAAAAAATA ATCCTCGCTA TACAAATAAG TTGAAAGATA 71482
.......... .......... .......... .......... .......... .......... 428
TAGCTACAAA ATAAGCAGAT GTCTCTCTAT GTTATGGGTG CAGGTATATC AAGACATGGG 71542
||||||| ||||||||||
.......... .......... .......... .......... ...GTATATC AAGACATGGG 445
ATTGCCTCTG TCACACTACT TCATCTACAC GGGGCACAAC TCATACCTGA CGGGGAACCA 71602
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATTGCCTCTG TCACACTACT TCATCTACAC GGGGCACAAC TCATACCTGA CGGGGAACCA 505
GCTGAGCAGC GGGTGCAGCG AGGTGCCCAT CGTGAAGGCC CTCCACGACG GCGTCCGTGT 71662
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTGAGCAGC GGGTGCAGCG AGGTGCCCAT CGTGAAGGCC CTCCACGACG GCGTCCGTGT 565
CATCGAGCTC GACCTCTGGC CCAACGCTGC CAAGGACGCC GTCGAGGTCC TCCACGGCAG 71722
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CATCGAGCTC GACCTCTGGC CCAACGCTGC CAAGGACGCC GTCGAGGTCC TCCACGGCAG 625
GTGATCCGCT CGATCAACCA CCATCCTACC TTCCTCCAAT CTCCATTGCA TCCTTAATTT 71782
.......... .......... .......... .......... .......... .......... 625
CAATTCACGA CAGATTTTTG CTATACGACA CTAGTCCCTT TGTCCACAGA TTTTGAGCAA 71842
.......... .......... .......... .......... .......... .......... 625
TTTTACCCAT CCTATATTTA TACCTCGAGG TACCACATTT TGCACATAAA ATTTTAATAC 71902
.......... .......... .......... .......... .......... .......... 625
CTTGGATATC AACTTTTACA CTATAAAGTA CCTCGAGGTA CCCAAAAATT GGTACCAAAT 71962
.......... .......... .......... .......... .......... .......... 625
ATTGGACGCT AAAATTACTC TAATTTTTTG TTTTAATTTT CCATTTCAAT CGTCCTCTCA 72022
.......... .......... .......... .......... .......... .......... 625
TGTAATTTCA TCATCTACTA CTCATCCTAA CTAGGCGATG AAAATCGTGG TATGAATTTT 72082
.......... .......... .......... .......... .......... .......... 625
ATCTTAATTT TATTATATTC TAAAACATTA AAATACTCAT ATTTTTTGGA TGAAAGTAGC 72142
.......... .......... .......... .......... .......... .......... 625
TGTTAACTAT GTTAATTTGT GAAATTTATG TTCAATATAA CAGTGCCTAT GATTAAAAGT 72202
.......... .......... .......... .......... .......... .......... 625
GCATTAAAAT TAAAAAAAAG GTTTAGTGGC CATCCTAGCC GTTGTGTATT TGCTGATGGG 72262
.......... .......... .......... .......... .......... .......... 625
TTGTCCTAAA TTAATTAATT AGAAAACCAA ATTAACTACT GCAGATTCAA CGAATTAAAT 72322
.......... .......... .......... .......... .......... .......... 625
TAAATTAATG AAATGGAAAC AAGACCAAAC TATGGACCTA TATGGGCCAA AATAAATCTA 72382
.......... .......... .......... .......... .......... .......... 625
CCGGCCCGTC ATTAGGAGAT AGAGTAGGCC CATGGGCAAT GAGGTGGCCC ATGGGCCGCG 72442
.......... .......... .......... .......... .......... .......... 625
TCCATCACCG GCCTGCTTCA CGACGCCGCC GCGCGCGCCG CGACCCGTCG GCTTCAGCTC 72502
.......... .......... .......... .......... .......... .......... 625
ACCGTTGCCA GCCGTCGCCG GAGAAGAAGC TGACGACGAT TTCGCTCCCG CAGGACGCTG 72562
|||||||
.......... .......... .......... .......... .......... ...GACGCTG 632
ACATCGCCAG TGGGTCTGAT GAAATGCCTT GAGGCCATCA GGGAGTACGC GTTCGTCGCC 72622
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACATCGCCAG TGGGTCTGAT GAAATGCCTT GAGGCCATCA GGGAGTACGC GTTCGTCGCC 692
TCCCCTTACC CCGTCATCCT CACCCTCGAA GATCACCTCA CTCCCGACCT CCAATCCAAA 72682
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCCCCTTACC CCGTCATCCT CACCCTCGAA GATCACCTCA CTCCCGACCT CCAATCCAAA 752
GTCGCCAAGG TGAACACGCA TTTGCCATCT CGATCACCTC ACCTTCTTCT TCCTCCATAT 72742
|||||||||
GTCGCCAAG. .......... .......... .......... .......... .......... 761
ACTGACAATG GCGGCATCGA TCGATGGATT TTCACTCGCG CAGATGATCA AGGAGACGTT 72802
||||||| ||||||||||
.......... .......... .......... .......... ...ATGATCA AGGAGACGTT 778
CGGTGACATG CTCTACGTCT CTGAAACTGA GAACATGGCG GAATTCCCTT CGCCGGACGA 72862
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGTGACATG CTCTACGTCT CTGAAACTGA GAACATGGCG GAATTCCCTT CGCCGGACGA 838
GCTCAAGGGG AAGATCATCG TGTCGACGAA GCCGCCCAAG GAGTACCTCC AGACCAAGAA 72922
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTCAAGGGG AAGATCATCG TGTCGACGAA GCCGCCCAAG GAGTACCTCC AGACCAAGAA 898
CGACGCCGAC GCCGACGAGG CCGGCGTCTG GGGCGAGGAG ATCACCGACG ACAAGGTGGC 72982
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGACGCCGAC GCCGACGAGG CCGGCGTCTG GGGCGAGGAG ATCACCGACG ACAAGGTGGC 958
GGCGACGGCG ATGACGACAG AAGAGAAATG CGCGGCGGCG GAGGAAGCAG TCGCCGCCGC 73042
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGCGACGGCG ATGACGACAG AAGAGAAATG CGCGGCGGCG GAGGAAGCAG TCGCCGCCGC 1018
CGCCGTCGAC GAGGAGATGC AGGAGGCCGA GACGGACAAG AAGACGCAGC ACGGGGTGGA 73102
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGCCGTCGAC GAGGAGATGC AGGAGGCCGA GACGGACAAG AAGACGCAGC ACGGGGTGGA 1078
CAACGAGTAC AGGCGCCTCA TCGCCATCCC TCTGACAAGA AGAAAGCACG ACATGGATCA 73162
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CAACGAGTAC AGGCGCCTCA TCGCCATCCC TCTGACAAGA AGAAAGCACG ACATGGATCA 1138
GGACCTCAAG GTCGATCCCG ACATGGTGAC GCGCCTCAGC CTCGGGGAGA AGGCCTACGA 73222
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGACCTCAAG GTCGATCCCG ACATGGTGAC GCGCCTCAGC CTCGGGGAGA AGGCCTACGA 1198
GAAGGCCATT GTCACCCATG GAGCTCACAT TATCAGGTGA TTTCAGCTTT AGTAACATGA 73282
|||||||||| |||||||||| |||||||||| ||||||
GAAGGCCATT GTCACCCATG GAGCTCACAT TATCAG.... .......... .......... 1234
CAGGTTTAGT TTGCATGTAC AGCTTATTCT GAACTGAACT CTGTGTCTGA CAGGATTAGT 73342
.......... .......... .......... .......... .......... .......... 1234
GTTCTTGTTC TTGTTCTTGT TCAGGTTTAC GCAGAGGAAA TTGCTGAGGA TATTCCCTCG 73402
|||||| |||||||||| |||||||||| ||||||||||
.......... .......... ....GTTTAC GCAGAGGAAA TTGCTGAGGA TATTCCCTCG 1270
GTCGACGCGC ATTACGTCTT CGAATTATAA TCCTTTGATG GGTTGGAGGT ATGGAGTTCA 73462
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTCGACGCGC ATTACGTCTT CGAATTATAA TCCTTTGATG GGTTGGAGGT ATGGAGTTCA 1330
GATGGTTGCA GCAAACATGC AGGTAACTAG TGCAATTTAT GTTATTTCTG TCACACTATT 73522
|||||||||| |||||||||| ||
GATGGTTGCA GCAAACATGC AG........ .......... .......... .......... 1352
AATAATGGTC TTATTCTGCA TGATAAGCAC ATGAGTCATC ATGTTTACTT TTTCAGTTCA 73582
.......... .......... .......... .......... .......... .......... 1352
GCATTGCAAT TGTGTTACAT ATAGTGGAGT GGTATTCTAT TTAACAAATC ACAACTTAGT 73642
.......... .......... .......... .......... .......... .......... 1352
TTGAACTAGT GAACTGGGAT ATCCTCTTGC AGAGTTGCAG TATAAAAGGA TTGTAGCAAG 73702
.......... .......... .......... .......... .......... .......... 1352
GAAACATTTT TTGTGTCTTT TTCTAAAATC AGGTCTAGCA CAAGGAAAGT ACTGAATAGT 73762
.......... .......... .......... .......... .......... .......... 1352
TTTTAAAAAA AAGGCTTTGT GAAGATACAT AATAGTTCAC CCACTTTGAT CTGAGCTATC 73822
.......... .......... .......... .......... .......... .......... 1352
TGCTACCATT CATGTTCAGG GCCATGGAAG AAAGCTGTGG CTGACTCAGG GGATGTTCCG 73882
| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .........G GCCATGGAAG AAAGCTGTGG CTGACTCAGG GGATGTTCCG 1393
AGCAAACGGC GGTTGCGGTT ACGTCAAAAA GCCTGATATT CTGATGAACA ACGATCCAGA 73942
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGCAAACGGC GGTTGCGGTT ACGTCAAAAA GCCTGATATT CTGATGAACA ACGATCCAGA 1453
TAAACTGTTT GATCCTACAT CCAAACTACC AGTAAAGACA AGACTAAAGG TAAACTGGAC 74002
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||
TAAACTGTTT GATCCTACAT CCAAACTACC AGTAAAGACA AGACTAAAG. .......... 1502
AAAAGCTAAA TTTCCTTTTA TTACCGGAAG ATCCCAAATG TGCTACTACT ATTTTTCATA 74062
.......... .......... .......... .......... .......... .......... 1502
TCTGCTACAG TAACTGAAAG TCTGTAACCA TTGTGTCAAT GCTACAAAAT CTGAAGGTGA 74122
||||
.......... .......... .......... .......... .......... ......GTGA 1506
CGGTGTACAT GGGAGACGGA TGGCGATTCG ACTTCCGCAA GACACATTTC GACAAATGCT 74182
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGTGTACAT GGGAGACGGA TGGCGATTCG ACTTCCGCAA GACACATTTC GACAAATGCT 1566
CACCCCCAGA CTTCTATGCA AGGGTTAGCA TTCTGATCAA TCTCATGTAC TACTTCCGTT 74242
|||||||||| |||||||||| |||
CACCCCCAGA CTTCTATGCA AGG....... .......... .......... .......... 1589
TTTTAATAGA TGATGTCATT AACTTTTAGA CACATGCTTA ACCATTCATC TTATTCAAAA 74302
.......... .......... .......... .......... .......... .......... 1589
AGTTTCGTAA TTATAGTTTA TTTTGTTGTG AGTTGTTTTT ATCACTAGAA CTACTTTAAA 74362
.......... .......... .......... .......... .......... .......... 1589
GCATGATTTA TATCTTATGT ATTTGCAAAA AAAATTAAAT AAGACGAAGA TCAAACGTGA 74422
.......... .......... .......... .......... .......... .......... 1589
GCCCAGAAGT TAACGACGTC TCATCTTTTA AAAAACAAAG AGAGTACTAC ATATCTAACA 74482
.......... .......... .......... .......... .......... .......... 1589
AATTAATCGA TTACCTAAGA TGTACTGAAA CTCTGAATGA GCTGTACACA GAGAAGCAAA 74542
.......... .......... .......... .......... .......... .......... 1589
CTCTGAATGT TCAGTTCAGA CTTCAGACAT GGCAAATGGC TGACAAGAAA AGAAAAACTG 74602
.......... .......... .......... .......... .......... .......... 1589
AAAACTACTG CAGGTGGGTA TAGCCGGAGT AGAAGCAGAC ACGAGGATGG AGCAGACGAA 74662
||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... ...GTGGGTA TAGCCGGAGT AGAAGCAGAC ACGAGGATGG AGCAGACGAA 1636
GGTGAAGATG GACACGTGGA TTCCGGCATG GGATCACGAG TTCGAGTTCC CGTTGAGCGT 74722
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTGAAGATG GACACGTGGA TTCCGGCATG GGATCACGAG TTCGAGTTCC CGTTGAGCGT 1696
GCCGGAGCTG GCGCTGCTCC GGGTGGAGGT GCACGAGTCC GACAACCACC AGAAGGACGA 74782
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCCGGAGCTG GCGCTGCTCC GGGTGGAGGT GCACGAGTCC GACAACCACC AGAAGGACGA 1756
CTTCGGCGGG CAGACCTGCC TGCCGGTGTG GGAGCTCCGG CGAGGCATCC GCTCCGTCAG 74842
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTCGGCGGG CAGACCTGCC TGCCGGTGTG GGAGCTCCGG CGAGGCATCC GCTCCGTCAG 1816
GCTCTGCGAC CACCGCGGCG AGCCCCTCCG CTCCGTCAAG CTCCTCATGC GCTTCGACTT 74902
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTCTGCGAC CACCGCGGCG AGCCCCTCCG CTCCGTCAAG CTCCTCATGC GCTTCGACTT 1876
CACCTGACTA CTCCATCTTC TTCTTCATCA TCGTCATCGT CTTAGTAGTA GTAGTTCCAT 74962
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CACCTGACTA CTCCATCTTC TTCTTCATCA TCGTCATCGT CTTAGTAGTA GTAGTTCCAT 1936
GTATGATATC ATGAGGGATG AAGCATTGAT CGTACTTTCT CCGTCCCGAA ATATAGCAAT 75022
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTATGATATC ATGAGGGATG AAGCATTGAT CGTACTTTCT CCGTCCCGAA ATATAGCAAT 1996
GTAGGATTAG ATGGAAACAT CTTAATACTA CGAATCTGGA TATGTCCTAT CTGGTTCTGG 75082
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTAGGATTAG ATGGAAACAT CTTAATACTA CGAATCTGGA TATGTCCTAT CTGGTTCTGG 2056
TTTGCTATGT TTTAGGACGA ATATAGTACA TAAAATTTTA GAAGTTTTGT TTTAAAAAAG 75142
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTGCTATGT TTTAGGACGA ATATAGTACA TAAAATTTTA GAAGTTTTGT TTTAAAAAAG 2116
AATAAATTTT GTGCGAAACG GAAGGTGTGA TTGTACATTT TGTACGTACA TTGTTTGTTG 75202
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AATAAATTTT GTGCGAAACG GAAGGTGTGA TTGTACATTT TGTACGTACA TTGTTTGTTG 2176
TTGATTAATA AACGTGTTAA TAAAAGAGGG AAGGATTCTT TT 75244
|||||||||| |||||||||| |||||||||| |||||||||| ||
TTGATTAATA AACGTGTTAA TAAAAGAGGG AAGGATTCTT TT 2218
hqPGS_AC129720+_32974942+ (69623 70049,71526 71722,72556 72691,72786 73258,73367 73484,73842 73991,74119 74205,74616 75244)
<A NAME="PGS2@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 2 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29645313" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29645313+</A>)
1 AGAAGATTAG CTTACCTTAC AAAAAAGTAA GTAGCCGTGC GAAGTCGCCG GCGGTGATCA
61 GCCGGCGATG ACGACGTACA GGGTGTGCCC CTTCCTGCGG CGGTTCAGGG CGGCGTCGAA
121 CGAGCCGTCG GAGGAGCTCG GCGACGTGTT CCAGGCGTAC GCCGACGGCG GCGGCGGCGT
181 GATGGGGGAG GAGGCGCTGA GGCGGTTCCT CCGGGAGGTG CAGGGGGAGG CCGCCGGCGG
241 CGGCGACGAC GAGCTGGAGG CGACGGCGAG GGAGGTGATG GCCTTCGCGG CGGAGCAGAG
301 GCTGCTCAGG AAGGGCGGCG CCGCTGCCGC CGGCGGCGGG CTCACCGTCG AGGGCTTCCA
361 CCGCTGGCTG TGCAGCGACG CCAACGCTGC ACTGGATCCT CAGAAACGGG TATATCAAGA
421 CATGGGATTG CCTCTGTCAC ACTACTTCAT CTACACGGGG CACAACTCAT ACCTGACGGG
481 GAACCAGCTG AGCAGCGGGT GCAGCGAGGT GCCCATCGTG AAGGCCCTCC ACGACGGCGT
541 CCGTGTCATC GAGCTCGACC TCTGGCCCAA CGCTGCCAAG GACGCCGTCG AGGTCCTCCA
601 CGGCAGGACG CTGACATCGC CAGTGGGTCT GATGAAATGC CTTGAGGCCA TCAGGGAGTA
661 CGCGTTCGTC GCCTCCCCTT ACCCCGTCAT CCTCACCCCT CGAAGATCAC CTCACTCCCG
721 ACCTCCAATC CAAAG
Predicted gene structure (within gDNA segment 69341 to 72988):
Exon 1 69641 70049 ( 409 n); cDNA 1 409 ( 409 n); score: 0.985
Intron 1 70050 71525 (1476 n); Pd: 1.000 (s: 1.00), Pa: 0.978 (s: 1.00)
Exon 2 71526 71722 ( 197 n); cDNA 410 606 ( 197 n); score: 1.000
Intron 2 71723 72555 ( 833 n); Pd: 0.872 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 3 72556 72683 ( 128 n); cDNA 607 735 ( 129 n); score: 0.984
MATCH AC129720+ 29645313+ 0.989 734 0.999 C
PGS_AC129720+_29645313+ (69641 70049,71526 71722,72556 72683)
Alignment (genomic DNA sequence = upper lines):
AGAAGATTAG CTTAGCTAGC TAAAAAGTAA GTAGCCGTGC GAAGTCGCCG GCGGTGATCA 69700
|||||||||| |||| || | ||||||||| |||||||||| |||||||||| ||||||||||
AGAAGATTAG CTTACCTTAC AAAAAAGTAA GTAGCCGTGC GAAGTCGCCG GCGGTGATCA 60
GCCGGCGATG ACGACGTACA GGGTGTGCTG CTTCCTGCGG CGGTTCAGGG CGGCGTCGAA 69760
|||||||||| |||||||||| |||||||| |||||||||| |||||||||| ||||||||||
GCCGGCGATG ACGACGTACA GGGTGTGCCC CTTCCTGCGG CGGTTCAGGG CGGCGTCGAA 120
CGAGCCGTCG GAGGAGCTCG GCGACGTGTT CCAGGCGTAC GCCGACGGCG GCGGCGGCGT 69820
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGAGCCGTCG GAGGAGCTCG GCGACGTGTT CCAGGCGTAC GCCGACGGCG GCGGCGGCGT 180
GATGGGGGAG GAGGCGCTGA GGCGGTTCCT CCGGGAGGTG CAGGGGGAGG CCGCCGGCGG 69880
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATGGGGGAG GAGGCGCTGA GGCGGTTCCT CCGGGAGGTG CAGGGGGAGG CCGCCGGCGG 240
CGGCGACGAC GAGCTGGAGG CGACGGCGAG GGAGGTGATG GCCTTCGCGG CGGAGCAGAG 69940
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGCGACGAC GAGCTGGAGG CGACGGCGAG GGAGGTGATG GCCTTCGCGG CGGAGCAGAG 300
GCTGCTCAGG AAGGGCGGCG CCGCTGCCGC CGGCGGCGGG CTCACCGTCG AGGGCTTCCA 70000
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTGCTCAGG AAGGGCGGCG CCGCTGCCGC CGGCGGCGGG CTCACCGTCG AGGGCTTCCA 360
CCGCTGGCTG TGCAGCGACG CCAACGCTGC ACTGGATCCT CAGAAACGGG TACGTACTTA 70060
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||
CCGCTGGCTG TGCAGCGACG CCAACGCTGC ACTGGATCCT CAGAAACGG. .......... 409
ATTTACGTGA TTAGTTAGCT AATTAAACTC GTAATTAACA CCTAATTAAT CATGATTATG 70120
.......... .......... .......... .......... .......... .......... 409
CATGGATTCG ACGATCTCTT CCTCCATCAT ATAGCTTAAT TAGCTACTCT TGTGTTCAAT 70180
.......... .......... .......... .......... .......... .......... 409
AGATACTACT ATTAACAAAT GAGTGTGAAA TCAATCTGTA ATAATAATAA TAATAATAAT 70240
.......... .......... .......... .......... .......... .......... 409
AATAATAATA ATAATAATAA TAATAATAAT AATAATAATA ATAATTGATA ATAATGCTCC 70300
.......... .......... .......... .......... .......... .......... 409
TCCTATGCTT TTCCTTTTTT TTTTACGGAA GAATGTAGAG TAGGCTTTAC CTTATAGTCA 70360
.......... .......... .......... .......... .......... .......... 409
TTTCATTAAT AGAAATGAGG TTTACAGATT ACATATTAGG TGTGGGAATC ATCAGAGAGA 70420
.......... .......... .......... .......... .......... .......... 409
AAAAAAGAAC AAAAAGCAGA ACAAACCAAA ACAGAAAAAG AGATAATTTA CAGATATATG 70480
.......... .......... .......... .......... .......... .......... 409
TACATGCCTA TGTTCTTCTA TAGAAACTAT ATCCCAGTTA CTTATTATGC GTATATATAT 70540
.......... .......... .......... .......... .......... .......... 409
AAGGAATTAA TTCACATTCA GGAGCAACTA GGCAAGGCCT TCATCGTCAG ATACTGTACA 70600
.......... .......... .......... .......... .......... .......... 409
TGGATAATCA TACAGAGGCT AACCATGGCC ATGCAACCTA GGGACCATGG ATGAGCTCTC 70660
.......... .......... .......... .......... .......... .......... 409
ACAAGCGCCT CCAAAACAAA AGAAGATAAG GTCCCTAGTC ATATGAGAAT GGAGAACAGG 70720
.......... .......... .......... .......... .......... .......... 409
TCGATGATAT TGGAATAAGT GAATTCCCGT CTTTCATTAT CAGTCTAAAT TTTTTATTCA 70780
.......... .......... .......... .......... .......... .......... 409
AACCAATTGA CGCATGCAAC TCAATATAGT ATCAGTCCCA AGTTTAAACC CTAGTTGGCA 70840
.......... .......... .......... .......... .......... .......... 409
TATAATTAAA TAAAAAATAC AACATATTTC TATCTGAGGT TTGAGGGGAC CTCGTGTGAA 70900
.......... .......... .......... .......... .......... .......... 409
GGGAAGTGTT GAAATATAAG TGAATTGTCC GTTTTTCTTC ATCAGCTTAA ACTTTTGGGT 70960
.......... .......... .......... .......... .......... .......... 409
TAAACTGTTC GGGATGTATT ACACAATAGT GAAAAGAATC TGTGTATACA ACTCAATGGT 71020
.......... .......... .......... .......... .......... .......... 409
GTGAAGGAGA AATTGGTCGA GTCTATAGAG GGGTCGGTGC GTACAACTCA ATCGTGGGAA 71080
.......... .......... .......... .......... .......... .......... 409
GTGAAGAGGA GGTCGGTGTG TACAACTCAA CAGTGGGAAG TGAAGAGGGA GGTTGGTGTG 71140
.......... .......... .......... .......... .......... .......... 409
TACAACTCTA TTTTTTTAGA TAAAGACAAC TCAATTAATA GTGGGAAGTA GGGGGGGGGG 71200
.......... .......... .......... .......... .......... .......... 409
GAAGGAGGGG GGGATCGGTG TGTACAATTC AATAGTGTAG AAGGGGAAAT TCAGATGAGC 71260
.......... .......... .......... .......... .......... .......... 409
ATGTTGCTGC CCATGCGCAG AGCTACGAGA AGACTGCTTT TGCGGTTTCG CCTAGGACAC 71320
.......... .......... .......... .......... .......... .......... 409
ATGCCATGTG AAAATATCAA GTCCTTTCGG TGAGCGAAGG ACCGAAGTCC TACATAACTT 71380
.......... .......... .......... .......... .......... .......... 409
TTTCCCTTGT TTGGTACTCG ATAAACCAAA ACCAAACCGT AAAAACTGAA TATATATTCA 71440
.......... .......... .......... .......... .......... .......... 409
TGTAAAAAAA TAATCCTCGC TATACAAATA AGTTGAAAGA TATAGCTACA AAATAAGCAG 71500
.......... .......... .......... .......... .......... .......... 409
ATGTCTCTCT ATGTTATGGG TGCAGGTATA TCAAGACATG GGATTGCCTC TGTCACACTA 71560
||||| |||||||||| |||||||||| ||||||||||
.......... .......... .....GTATA TCAAGACATG GGATTGCCTC TGTCACACTA 444
CTTCATCTAC ACGGGGCACA ACTCATACCT GACGGGGAAC CAGCTGAGCA GCGGGTGCAG 71620
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTCATCTAC ACGGGGCACA ACTCATACCT GACGGGGAAC CAGCTGAGCA GCGGGTGCAG 504
CGAGGTGCCC ATCGTGAAGG CCCTCCACGA CGGCGTCCGT GTCATCGAGC TCGACCTCTG 71680
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGAGGTGCCC ATCGTGAAGG CCCTCCACGA CGGCGTCCGT GTCATCGAGC TCGACCTCTG 564
GCCCAACGCT GCCAAGGACG CCGTCGAGGT CCTCCACGGC AGGTGATCCG CTCGATCAAC 71740
|||||||||| |||||||||| |||||||||| |||||||||| ||
GCCCAACGCT GCCAAGGACG CCGTCGAGGT CCTCCACGGC AG........ .......... 606
CACCATCCTA CCTTCCTCCA ATCTCCATTG CATCCTTAAT TTCAATTCAC GACAGATTTT 71800
.......... .......... .......... .......... .......... .......... 606
TGCTATACGA CACTAGTCCC TTTGTCCACA GATTTTGAGC AATTTTACCC ATCCTATATT 71860
.......... .......... .......... .......... .......... .......... 606
TATACCTCGA GGTACCACAT TTTGCACATA AAATTTTAAT ACCTTGGATA TCAACTTTTA 71920
.......... .......... .......... .......... .......... .......... 606
CACTATAAAG TACCTCGAGG TACCCAAAAA TTGGTACCAA ATATTGGACG CTAAAATTAC 71980
.......... .......... .......... .......... .......... .......... 606
TCTAATTTTT TGTTTTAATT TTCCATTTCA ATCGTCCTCT CATGTAATTT CATCATCTAC 72040
.......... .......... .......... .......... .......... .......... 606
TACTCATCCT AACTAGGCGA TGAAAATCGT GGTATGAATT TTATCTTAAT TTTATTATAT 72100
.......... .......... .......... .......... .......... .......... 606
TCTAAAACAT TAAAATACTC ATATTTTTTG GATGAAAGTA GCTGTTAACT ATGTTAATTT 72160
.......... .......... .......... .......... .......... .......... 606
GTGAAATTTA TGTTCAATAT AACAGTGCCT ATGATTAAAA GTGCATTAAA ATTAAAAAAA 72220
.......... .......... .......... .......... .......... .......... 606
AGGTTTAGTG GCCATCCTAG CCGTTGTGTA TTTGCTGATG GGTTGTCCTA AATTAATTAA 72280
.......... .......... .......... .......... .......... .......... 606
TTAGAAAACC AAATTAACTA CTGCAGATTC AACGAATTAA ATTAAATTAA TGAAATGGAA 72340
.......... .......... .......... .......... .......... .......... 606
ACAAGACCAA ACTATGGACC TATATGGGCC AAAATAAATC TACCGGCCCG TCATTAGGAG 72400
.......... .......... .......... .......... .......... .......... 606
ATAGAGTAGG CCCATGGGCA ATGAGGTGGC CCATGGGCCG CGTCCATCAC CGGCCTGCTT 72460
.......... .......... .......... .......... .......... .......... 606
CACGACGCCG CCGCGCGCGC CGCGACCCGT CGGCTTCAGC TCACCGTTGC CAGCCGTCGC 72520
.......... .......... .......... .......... .......... .......... 606
CGGAGAAGAA GCTGACGACG ATTTCGCTCC CGCAGGACGC TGACATCGCC AGTGGGTCTG 72580
||||| |||||||||| ||||||||||
.......... .......... .......... .....GACGC TGACATCGCC AGTGGGTCTG 631
ATGAAATGCC TTGAGGCCAT CAGGGAGTAC GCGTTCGTCG CCTCCCCTTA CCCCGTCATC 72640
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATGAAATGCC TTGAGGCCAT CAGGGAGTAC GCGTTCGTCG CCTCCCCTTA CCCCGTCATC 691
CTCA-CCCTC GAAGATCACC TCACTCCCGA CCTCCAATCC AAAG 72683
|||| ||||| |||||||||| |||||||||| |||||||||| ||||
CTCACCCCTC GAAGATCACC TCACTCCCGA CCTCCAATCC AAAG 735
hqPGS_AC129720+_29645313+ (69641 70049,71526 71722,72556 72683)
<A NAME="PGS3@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 3 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29623942" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29623942+</A>)
1 GAAGATTAGC TTAGCTAGCT AAAAAGTAAG TAGCCGTGCG AAGTCGCCGG CGGTGATCAG
61 CCGGCGATGA CGACGTACAG GGTGTGCTGC TTCCTGCGGC GGTTCAGGGC GGCGTCGAAC
121 GAGCCGTCGG AGGAGCTCGG CGACGTGTTC CAGGCGTACG CCGACGGCGG CGGCGGCGTG
181 ATGGGGGAGG AGGCGCTGAG GCGGTTCCTC CGGGAGGTGC AGGGGGAGGC CGCCGGCGGC
241 GGCGACGACG AGCTGGAGGC GACGGCGAGG GAGGTGATGG CCTTCGCGGC GGAGCAGAGG
301 CTGCTCAGGA AGGGCGGCGC CGCTGCCGCC GGCGGCGGGC TCACCGTCGA GGGCTTCCAC
361 CGCTGGCTGT GCAGCGACGC CAACGCTGCA CTGGATCCTC AGAAACGGGT ATATCAAGAC
421 ATGGGATTGC CTCTGTCACA CTACTTCATC TACACGGGGC ACAACTCATA CCTGACGGGG
481 AACCAGCTGA GCAGCGGGTG CAGCGAGGTG CCCATCGTGA AGGCCCTCCA CGACGGCGTC
541 CGTGTCATCG AGCTCGACCT CTGGCCCAAC GCTGCCAAGG ACGCCGTCGA GGTCCTCCAC
601 GGCAGGACGC TGACATCGCC GGTGGGTCTG ATGAAGTGCC TTGAGGCCAT CAGGGAGTAC
661 GCGTTCGTCG CCTCCCCTTA CCCCGTCATC CTCACCCTCG AAGATCACCT CACTCCCGAC
721 CTCCAATCCA AAGTCGCCAA GATGATCAAG GAGACGTTCG GTGACATGCT CTACGTCTC
Predicted gene structure (within gDNA segment 69342 to 73128):
Exon 1 69642 70049 ( 408 n); cDNA 1 408 ( 408 n); score: 1.000
Intron 1 70050 71525 (1476 n); Pd: 1.000 (s: 1.00), Pa: 0.978 (s: 1.00)
Exon 2 71526 71722 ( 197 n); cDNA 409 605 ( 197 n); score: 1.000
Intron 2 71723 72555 ( 833 n); Pd: 0.872 (s: 1.00), Pa: 0.000 (s: 0.96)
Exon 3 72556 72691 ( 136 n); cDNA 606 741 ( 136 n); score: 0.985
Intron 3 72692 72785 ( 94 n); Pd: 0.704 (s: 1.00), Pa: 0.000 (s: 0)
Exon 4 72786 72823 ( 38 n); cDNA 742 779 ( 38 n); score: 1.000
MATCH AC129720+ 29623942+ 0.997 779 1.000 C
PGS_AC129720+_29623942+ (69642 70049,71526 71722,72556 72691,72786 72823)
Alignment (genomic DNA sequence = upper lines):
GAAGATTAGC TTAGCTAGCT AAAAAGTAAG TAGCCGTGCG AAGTCGCCGG CGGTGATCAG 69701
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAAGATTAGC TTAGCTAGCT AAAAAGTAAG TAGCCGTGCG AAGTCGCCGG CGGTGATCAG 60
CCGGCGATGA CGACGTACAG GGTGTGCTGC TTCCTGCGGC GGTTCAGGGC GGCGTCGAAC 69761
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCGGCGATGA CGACGTACAG GGTGTGCTGC TTCCTGCGGC GGTTCAGGGC GGCGTCGAAC 120
GAGCCGTCGG AGGAGCTCGG CGACGTGTTC CAGGCGTACG CCGACGGCGG CGGCGGCGTG 69821
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGCCGTCGG AGGAGCTCGG CGACGTGTTC CAGGCGTACG CCGACGGCGG CGGCGGCGTG 180
ATGGGGGAGG AGGCGCTGAG GCGGTTCCTC CGGGAGGTGC AGGGGGAGGC CGCCGGCGGC 69881
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATGGGGGAGG AGGCGCTGAG GCGGTTCCTC CGGGAGGTGC AGGGGGAGGC CGCCGGCGGC 240
GGCGACGACG AGCTGGAGGC GACGGCGAGG GAGGTGATGG CCTTCGCGGC GGAGCAGAGG 69941
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGCGACGACG AGCTGGAGGC GACGGCGAGG GAGGTGATGG CCTTCGCGGC GGAGCAGAGG 300
CTGCTCAGGA AGGGCGGCGC CGCTGCCGCC GGCGGCGGGC TCACCGTCGA GGGCTTCCAC 70001
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGCTCAGGA AGGGCGGCGC CGCTGCCGCC GGCGGCGGGC TCACCGTCGA GGGCTTCCAC 360
CGCTGGCTGT GCAGCGACGC CAACGCTGCA CTGGATCCTC AGAAACGGGT ACGTACTTAA 70061
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||
CGCTGGCTGT GCAGCGACGC CAACGCTGCA CTGGATCCTC AGAAACGG.. .......... 408
TTTACGTGAT TAGTTAGCTA ATTAAACTCG TAATTAACAC CTAATTAATC ATGATTATGC 70121
.......... .......... .......... .......... .......... .......... 408
ATGGATTCGA CGATCTCTTC CTCCATCATA TAGCTTAATT AGCTACTCTT GTGTTCAATA 70181
.......... .......... .......... .......... .......... .......... 408
GATACTACTA TTAACAAATG AGTGTGAAAT CAATCTGTAA TAATAATAAT AATAATAATA 70241
.......... .......... .......... .......... .......... .......... 408
ATAATAATAA TAATAATAAT AATAATAATA ATAATAATAA TAATTGATAA TAATGCTCCT 70301
.......... .......... .......... .......... .......... .......... 408
CCTATGCTTT TCCTTTTTTT TTTACGGAAG AATGTAGAGT AGGCTTTACC TTATAGTCAT 70361
.......... .......... .......... .......... .......... .......... 408
TTCATTAATA GAAATGAGGT TTACAGATTA CATATTAGGT GTGGGAATCA TCAGAGAGAA 70421
.......... .......... .......... .......... .......... .......... 408
AAAAAGAACA AAAAGCAGAA CAAACCAAAA CAGAAAAAGA GATAATTTAC AGATATATGT 70481
.......... .......... .......... .......... .......... .......... 408
ACATGCCTAT GTTCTTCTAT AGAAACTATA TCCCAGTTAC TTATTATGCG TATATATATA 70541
.......... .......... .......... .......... .......... .......... 408
AGGAATTAAT TCACATTCAG GAGCAACTAG GCAAGGCCTT CATCGTCAGA TACTGTACAT 70601
.......... .......... .......... .......... .......... .......... 408
GGATAATCAT ACAGAGGCTA ACCATGGCCA TGCAACCTAG GGACCATGGA TGAGCTCTCA 70661
.......... .......... .......... .......... .......... .......... 408
CAAGCGCCTC CAAAACAAAA GAAGATAAGG TCCCTAGTCA TATGAGAATG GAGAACAGGT 70721
.......... .......... .......... .......... .......... .......... 408
CGATGATATT GGAATAAGTG AATTCCCGTC TTTCATTATC AGTCTAAATT TTTTATTCAA 70781
.......... .......... .......... .......... .......... .......... 408
ACCAATTGAC GCATGCAACT CAATATAGTA TCAGTCCCAA GTTTAAACCC TAGTTGGCAT 70841
.......... .......... .......... .......... .......... .......... 408
ATAATTAAAT AAAAAATACA ACATATTTCT ATCTGAGGTT TGAGGGGACC TCGTGTGAAG 70901
.......... .......... .......... .......... .......... .......... 408
GGAAGTGTTG AAATATAAGT GAATTGTCCG TTTTTCTTCA TCAGCTTAAA CTTTTGGGTT 70961
.......... .......... .......... .......... .......... .......... 408
AAACTGTTCG GGATGTATTA CACAATAGTG AAAAGAATCT GTGTATACAA CTCAATGGTG 71021
.......... .......... .......... .......... .......... .......... 408
TGAAGGAGAA ATTGGTCGAG TCTATAGAGG GGTCGGTGCG TACAACTCAA TCGTGGGAAG 71081
.......... .......... .......... .......... .......... .......... 408
TGAAGAGGAG GTCGGTGTGT ACAACTCAAC AGTGGGAAGT GAAGAGGGAG GTTGGTGTGT 71141
.......... .......... .......... .......... .......... .......... 408
ACAACTCTAT TTTTTTAGAT AAAGACAACT CAATTAATAG TGGGAAGTAG GGGGGGGGGG 71201
.......... .......... .......... .......... .......... .......... 408
AAGGAGGGGG GGATCGGTGT GTACAATTCA ATAGTGTAGA AGGGGAAATT CAGATGAGCA 71261
.......... .......... .......... .......... .......... .......... 408
TGTTGCTGCC CATGCGCAGA GCTACGAGAA GACTGCTTTT GCGGTTTCGC CTAGGACACA 71321
.......... .......... .......... .......... .......... .......... 408
TGCCATGTGA AAATATCAAG TCCTTTCGGT GAGCGAAGGA CCGAAGTCCT ACATAACTTT 71381
.......... .......... .......... .......... .......... .......... 408
TTCCCTTGTT TGGTACTCGA TAAACCAAAA CCAAACCGTA AAAACTGAAT ATATATTCAT 71441
.......... .......... .......... .......... .......... .......... 408
GTAAAAAAAT AATCCTCGCT ATACAAATAA GTTGAAAGAT ATAGCTACAA AATAAGCAGA 71501
.......... .......... .......... .......... .......... .......... 408
TGTCTCTCTA TGTTATGGGT GCAGGTATAT CAAGACATGG GATTGCCTCT GTCACACTAC 71561
|||||| |||||||||| |||||||||| ||||||||||
.......... .......... ....GTATAT CAAGACATGG GATTGCCTCT GTCACACTAC 444
TTCATCTACA CGGGGCACAA CTCATACCTG ACGGGGAACC AGCTGAGCAG CGGGTGCAGC 71621
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCATCTACA CGGGGCACAA CTCATACCTG ACGGGGAACC AGCTGAGCAG CGGGTGCAGC 504
GAGGTGCCCA TCGTGAAGGC CCTCCACGAC GGCGTCCGTG TCATCGAGCT CGACCTCTGG 71681
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGGTGCCCA TCGTGAAGGC CCTCCACGAC GGCGTCCGTG TCATCGAGCT CGACCTCTGG 564
CCCAACGCTG CCAAGGACGC CGTCGAGGTC CTCCACGGCA GGTGATCCGC TCGATCAACC 71741
|||||||||| |||||||||| |||||||||| |||||||||| |
CCCAACGCTG CCAAGGACGC CGTCGAGGTC CTCCACGGCA G......... .......... 605
ACCATCCTAC CTTCCTCCAA TCTCCATTGC ATCCTTAATT TCAATTCACG ACAGATTTTT 71801
.......... .......... .......... .......... .......... .......... 605
GCTATACGAC ACTAGTCCCT TTGTCCACAG ATTTTGAGCA ATTTTACCCA TCCTATATTT 71861
.......... .......... .......... .......... .......... .......... 605
ATACCTCGAG GTACCACATT TTGCACATAA AATTTTAATA CCTTGGATAT CAACTTTTAC 71921
.......... .......... .......... .......... .......... .......... 605
ACTATAAAGT ACCTCGAGGT ACCCAAAAAT TGGTACCAAA TATTGGACGC TAAAATTACT 71981
.......... .......... .......... .......... .......... .......... 605
CTAATTTTTT GTTTTAATTT TCCATTTCAA TCGTCCTCTC ATGTAATTTC ATCATCTACT 72041
.......... .......... .......... .......... .......... .......... 605
ACTCATCCTA ACTAGGCGAT GAAAATCGTG GTATGAATTT TATCTTAATT TTATTATATT 72101
.......... .......... .......... .......... .......... .......... 605
CTAAAACATT AAAATACTCA TATTTTTTGG ATGAAAGTAG CTGTTAACTA TGTTAATTTG 72161
.......... .......... .......... .......... .......... .......... 605
TGAAATTTAT GTTCAATATA ACAGTGCCTA TGATTAAAAG TGCATTAAAA TTAAAAAAAA 72221
.......... .......... .......... .......... .......... .......... 605
GGTTTAGTGG CCATCCTAGC CGTTGTGTAT TTGCTGATGG GTTGTCCTAA ATTAATTAAT 72281
.......... .......... .......... .......... .......... .......... 605
TAGAAAACCA AATTAACTAC TGCAGATTCA ACGAATTAAA TTAAATTAAT GAAATGGAAA 72341
.......... .......... .......... .......... .......... .......... 605
CAAGACCAAA CTATGGACCT ATATGGGCCA AAATAAATCT ACCGGCCCGT CATTAGGAGA 72401
.......... .......... .......... .......... .......... .......... 605
TAGAGTAGGC CCATGGGCAA TGAGGTGGCC CATGGGCCGC GTCCATCACC GGCCTGCTTC 72461
.......... .......... .......... .......... .......... .......... 605
ACGACGCCGC CGCGCGCGCC GCGACCCGTC GGCTTCAGCT CACCGTTGCC AGCCGTCGCC 72521
.......... .......... .......... .......... .......... .......... 605
GGAGAAGAAG CTGACGACGA TTTCGCTCCC GCAGGACGCT GACATCGCCA GTGGGTCTGA 72581
|||||| ||||||||| ||||||||||
.......... .......... .......... ....GACGCT GACATCGCCG GTGGGTCTGA 631
TGAAATGCCT TGAGGCCATC AGGGAGTACG CGTTCGTCGC CTCCCCTTAC CCCGTCATCC 72641
|||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGAAGTGCCT TGAGGCCATC AGGGAGTACG CGTTCGTCGC CTCCCCTTAC CCCGTCATCC 691
TCACCCTCGA AGATCACCTC ACTCCCGACC TCCAATCCAA AGTCGCCAAG GTGAACACGC 72701
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCACCCTCGA AGATCACCTC ACTCCCGACC TCCAATCCAA AGTCGCCAAG .......... 741
ATTTGCCATC TCGATCACCT CACCTTCTTC TTCCTCCATA TACTGACAAT GGCGGCATCG 72761
.......... .......... .......... .......... .......... .......... 741
ATCGATGGAT TTTCACTCGC GCAGATGATC AAGGAGACGT TCGGTGACAT GCTCTACGTC 72821
|||||| |||||||||| |||||||||| ||||||||||
.......... .......... ....ATGATC AAGGAGACGT TCGGTGACAT GCTCTACGTC 777
TC 72823
||
TC 779
hqPGS_AC129720+_29623942+ (69642 70049,71526 71722,72556 72691,72786 72823)
<A NAME="PGS4@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 4 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29623982" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29623982+</A>)
1 GAAGATTAGC TTAGCTAGCT AAAAAGTAAG TAGCCGTGCG AAGTCGCCGG CGGTGATCAG
61 CCGGCGATGA CGACGTACAG GGTGTGCTGC TTCCTGCGGC GGTTCAGGGC GGCGTCGAAC
121 GAGCCGTCGG AGGAGCTCGG CGACGTGTTC CAGGCGTACG CCGACGGCGG CGGCGGCGTG
181 ATGGGGGAGG AGGCGCTGAG GCGGTTCCTC CGGGAGGTGC AGGGGGAGGC CGCCGGCGGC
241 GGCGACGACG AGCTGGAGGC GACGGCGAGG GAGGTGATGG CCTTCGCGGC GGAGCAGAGG
301 CTGCTCAGGA AGGGCGGCGC CGCTGCCGCC GGCGGCGGGC TCACCGTCGA GGGCTTCCAC
361 CGCTGGCTGT GCAGCGACGC CAACGCTGCA CTGGATCCTC AGAAACGGGT ATATCAAGAC
421 ATGGGATTGC CTCTGTCACA CTACTTCATC TACACGGGGC ACAACTCATA CCTGACGGGG
481 AACCAGCTGA GCAGCGGGTG CAGCGAGGTG CCCATCGTGA AGGCCCTCCA CGACGGCGTC
541 CGTGTCATCG AGCTCGACCT CTGGCCCAAC GCTGCCAAGG ACGCCGTCGA GGTCCTCCAC
601 GGCAGGACGC TGACATCGCC GGTGGGTCTG ATGAAGTGCC TTGAGGCCAT CAGGGAGTAC
661 GCGTTCGTCG CCTCCCCTTA CCCCGTCATC CTCACCCTCG AAGATCACCT CACTCCCGAC
721 CTCCAAT
Predicted gene structure (within gDNA segment 69342 to 72982):
Exon 1 69642 70049 ( 408 n); cDNA 1 408 ( 408 n); score: 1.000
Intron 1 70050 71525 (1476 n); Pd: 1.000 (s: 1.00), Pa: 0.978 (s: 1.00)
Exon 2 71526 71722 ( 197 n); cDNA 409 605 ( 197 n); score: 1.000
Intron 2 71723 72555 ( 833 n); Pd: 0.872 (s: 1.00), Pa: 0.000 (s: 0.96)
Exon 3 72556 72677 ( 122 n); cDNA 606 727 ( 122 n); score: 0.984
MATCH AC129720+ 29623982+ 0.997 727 1.000 C
PGS_AC129720+_29623982+ (69642 70049,71526 71722,72556 72677)
Alignment (genomic DNA sequence = upper lines):
GAAGATTAGC TTAGCTAGCT AAAAAGTAAG TAGCCGTGCG AAGTCGCCGG CGGTGATCAG 69701
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAAGATTAGC TTAGCTAGCT AAAAAGTAAG TAGCCGTGCG AAGTCGCCGG CGGTGATCAG 60
CCGGCGATGA CGACGTACAG GGTGTGCTGC TTCCTGCGGC GGTTCAGGGC GGCGTCGAAC 69761
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCGGCGATGA CGACGTACAG GGTGTGCTGC TTCCTGCGGC GGTTCAGGGC GGCGTCGAAC 120
GAGCCGTCGG AGGAGCTCGG CGACGTGTTC CAGGCGTACG CCGACGGCGG CGGCGGCGTG 69821
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGCCGTCGG AGGAGCTCGG CGACGTGTTC CAGGCGTACG CCGACGGCGG CGGCGGCGTG 180
ATGGGGGAGG AGGCGCTGAG GCGGTTCCTC CGGGAGGTGC AGGGGGAGGC CGCCGGCGGC 69881
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATGGGGGAGG AGGCGCTGAG GCGGTTCCTC CGGGAGGTGC AGGGGGAGGC CGCCGGCGGC 240
GGCGACGACG AGCTGGAGGC GACGGCGAGG GAGGTGATGG CCTTCGCGGC GGAGCAGAGG 69941
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGCGACGACG AGCTGGAGGC GACGGCGAGG GAGGTGATGG CCTTCGCGGC GGAGCAGAGG 300
CTGCTCAGGA AGGGCGGCGC CGCTGCCGCC GGCGGCGGGC TCACCGTCGA GGGCTTCCAC 70001
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGCTCAGGA AGGGCGGCGC CGCTGCCGCC GGCGGCGGGC TCACCGTCGA GGGCTTCCAC 360
CGCTGGCTGT GCAGCGACGC CAACGCTGCA CTGGATCCTC AGAAACGGGT ACGTACTTAA 70061
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||
CGCTGGCTGT GCAGCGACGC CAACGCTGCA CTGGATCCTC AGAAACGG.. .......... 408
TTTACGTGAT TAGTTAGCTA ATTAAACTCG TAATTAACAC CTAATTAATC ATGATTATGC 70121
.......... .......... .......... .......... .......... .......... 408
ATGGATTCGA CGATCTCTTC CTCCATCATA TAGCTTAATT AGCTACTCTT GTGTTCAATA 70181
.......... .......... .......... .......... .......... .......... 408
GATACTACTA TTAACAAATG AGTGTGAAAT CAATCTGTAA TAATAATAAT AATAATAATA 70241
.......... .......... .......... .......... .......... .......... 408
ATAATAATAA TAATAATAAT AATAATAATA ATAATAATAA TAATTGATAA TAATGCTCCT 70301
.......... .......... .......... .......... .......... .......... 408
CCTATGCTTT TCCTTTTTTT TTTACGGAAG AATGTAGAGT AGGCTTTACC TTATAGTCAT 70361
.......... .......... .......... .......... .......... .......... 408
TTCATTAATA GAAATGAGGT TTACAGATTA CATATTAGGT GTGGGAATCA TCAGAGAGAA 70421
.......... .......... .......... .......... .......... .......... 408
AAAAAGAACA AAAAGCAGAA CAAACCAAAA CAGAAAAAGA GATAATTTAC AGATATATGT 70481
.......... .......... .......... .......... .......... .......... 408
ACATGCCTAT GTTCTTCTAT AGAAACTATA TCCCAGTTAC TTATTATGCG TATATATATA 70541
.......... .......... .......... .......... .......... .......... 408
AGGAATTAAT TCACATTCAG GAGCAACTAG GCAAGGCCTT CATCGTCAGA TACTGTACAT 70601
.......... .......... .......... .......... .......... .......... 408
GGATAATCAT ACAGAGGCTA ACCATGGCCA TGCAACCTAG GGACCATGGA TGAGCTCTCA 70661
.......... .......... .......... .......... .......... .......... 408
CAAGCGCCTC CAAAACAAAA GAAGATAAGG TCCCTAGTCA TATGAGAATG GAGAACAGGT 70721
.......... .......... .......... .......... .......... .......... 408
CGATGATATT GGAATAAGTG AATTCCCGTC TTTCATTATC AGTCTAAATT TTTTATTCAA 70781
.......... .......... .......... .......... .......... .......... 408
ACCAATTGAC GCATGCAACT CAATATAGTA TCAGTCCCAA GTTTAAACCC TAGTTGGCAT 70841
.......... .......... .......... .......... .......... .......... 408
ATAATTAAAT AAAAAATACA ACATATTTCT ATCTGAGGTT TGAGGGGACC TCGTGTGAAG 70901
.......... .......... .......... .......... .......... .......... 408
GGAAGTGTTG AAATATAAGT GAATTGTCCG TTTTTCTTCA TCAGCTTAAA CTTTTGGGTT 70961
.......... .......... .......... .......... .......... .......... 408
AAACTGTTCG GGATGTATTA CACAATAGTG AAAAGAATCT GTGTATACAA CTCAATGGTG 71021
.......... .......... .......... .......... .......... .......... 408
TGAAGGAGAA ATTGGTCGAG TCTATAGAGG GGTCGGTGCG TACAACTCAA TCGTGGGAAG 71081
.......... .......... .......... .......... .......... .......... 408
TGAAGAGGAG GTCGGTGTGT ACAACTCAAC AGTGGGAAGT GAAGAGGGAG GTTGGTGTGT 71141
.......... .......... .......... .......... .......... .......... 408
ACAACTCTAT TTTTTTAGAT AAAGACAACT CAATTAATAG TGGGAAGTAG GGGGGGGGGG 71201
.......... .......... .......... .......... .......... .......... 408
AAGGAGGGGG GGATCGGTGT GTACAATTCA ATAGTGTAGA AGGGGAAATT CAGATGAGCA 71261
.......... .......... .......... .......... .......... .......... 408
TGTTGCTGCC CATGCGCAGA GCTACGAGAA GACTGCTTTT GCGGTTTCGC CTAGGACACA 71321
.......... .......... .......... .......... .......... .......... 408
TGCCATGTGA AAATATCAAG TCCTTTCGGT GAGCGAAGGA CCGAAGTCCT ACATAACTTT 71381
.......... .......... .......... .......... .......... .......... 408
TTCCCTTGTT TGGTACTCGA TAAACCAAAA CCAAACCGTA AAAACTGAAT ATATATTCAT 71441
.......... .......... .......... .......... .......... .......... 408
GTAAAAAAAT AATCCTCGCT ATACAAATAA GTTGAAAGAT ATAGCTACAA AATAAGCAGA 71501
.......... .......... .......... .......... .......... .......... 408
TGTCTCTCTA TGTTATGGGT GCAGGTATAT CAAGACATGG GATTGCCTCT GTCACACTAC 71561
|||||| |||||||||| |||||||||| ||||||||||
.......... .......... ....GTATAT CAAGACATGG GATTGCCTCT GTCACACTAC 444
TTCATCTACA CGGGGCACAA CTCATACCTG ACGGGGAACC AGCTGAGCAG CGGGTGCAGC 71621
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCATCTACA CGGGGCACAA CTCATACCTG ACGGGGAACC AGCTGAGCAG CGGGTGCAGC 504
GAGGTGCCCA TCGTGAAGGC CCTCCACGAC GGCGTCCGTG TCATCGAGCT CGACCTCTGG 71681
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGGTGCCCA TCGTGAAGGC CCTCCACGAC GGCGTCCGTG TCATCGAGCT CGACCTCTGG 564
CCCAACGCTG CCAAGGACGC CGTCGAGGTC CTCCACGGCA GGTGATCCGC TCGATCAACC 71741
|||||||||| |||||||||| |||||||||| |||||||||| |
CCCAACGCTG CCAAGGACGC CGTCGAGGTC CTCCACGGCA G......... .......... 605
ACCATCCTAC CTTCCTCCAA TCTCCATTGC ATCCTTAATT TCAATTCACG ACAGATTTTT 71801
.......... .......... .......... .......... .......... .......... 605
GCTATACGAC ACTAGTCCCT TTGTCCACAG ATTTTGAGCA ATTTTACCCA TCCTATATTT 71861
.......... .......... .......... .......... .......... .......... 605
ATACCTCGAG GTACCACATT TTGCACATAA AATTTTAATA CCTTGGATAT CAACTTTTAC 71921
.......... .......... .......... .......... .......... .......... 605
ACTATAAAGT ACCTCGAGGT ACCCAAAAAT TGGTACCAAA TATTGGACGC TAAAATTACT 71981
.......... .......... .......... .......... .......... .......... 605
CTAATTTTTT GTTTTAATTT TCCATTTCAA TCGTCCTCTC ATGTAATTTC ATCATCTACT 72041
.......... .......... .......... .......... .......... .......... 605
ACTCATCCTA ACTAGGCGAT GAAAATCGTG GTATGAATTT TATCTTAATT TTATTATATT 72101
.......... .......... .......... .......... .......... .......... 605
CTAAAACATT AAAATACTCA TATTTTTTGG ATGAAAGTAG CTGTTAACTA TGTTAATTTG 72161
.......... .......... .......... .......... .......... .......... 605
TGAAATTTAT GTTCAATATA ACAGTGCCTA TGATTAAAAG TGCATTAAAA TTAAAAAAAA 72221
.......... .......... .......... .......... .......... .......... 605
GGTTTAGTGG CCATCCTAGC CGTTGTGTAT TTGCTGATGG GTTGTCCTAA ATTAATTAAT 72281
.......... .......... .......... .......... .......... .......... 605
TAGAAAACCA AATTAACTAC TGCAGATTCA ACGAATTAAA TTAAATTAAT GAAATGGAAA 72341
.......... .......... .......... .......... .......... .......... 605
CAAGACCAAA CTATGGACCT ATATGGGCCA AAATAAATCT ACCGGCCCGT CATTAGGAGA 72401
.......... .......... .......... .......... .......... .......... 605
TAGAGTAGGC CCATGGGCAA TGAGGTGGCC CATGGGCCGC GTCCATCACC GGCCTGCTTC 72461
.......... .......... .......... .......... .......... .......... 605
ACGACGCCGC CGCGCGCGCC GCGACCCGTC GGCTTCAGCT CACCGTTGCC AGCCGTCGCC 72521
.......... .......... .......... .......... .......... .......... 605
GGAGAAGAAG CTGACGACGA TTTCGCTCCC GCAGGACGCT GACATCGCCA GTGGGTCTGA 72581
|||||| ||||||||| ||||||||||
.......... .......... .......... ....GACGCT GACATCGCCG GTGGGTCTGA 631
TGAAATGCCT TGAGGCCATC AGGGAGTACG CGTTCGTCGC CTCCCCTTAC CCCGTCATCC 72641
|||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGAAGTGCCT TGAGGCCATC AGGGAGTACG CGTTCGTCGC CTCCCCTTAC CCCGTCATCC 691
TCACCCTCGA AGATCACCTC ACTCCCGACC TCCAAT 72677
|||||||||| |||||||||| |||||||||| ||||||
TCACCCTCGA AGATCACCTC ACTCCCGACC TCCAAT 727
hqPGS_AC129720+_29623982+ (69642 70049,71526 71722,72556 72677)
<A NAME="PGS5@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 5 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29614363" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29614363+</A>)
1 AGCTTAGCTA GCTAAAAAGT AAGTAGCCGT GCGAAGTCGC CGGCGGTGAT CAGCCGGCGA
61 TGACGACGTA CAGGGTGTGC TGCTTCCTGC GGCGGTTCAG GGCGGCGTCT AACGAGCCGT
121 CGGAGGAGCT CGGCGACGTG TTCCAGGCGT ACGCCGACGG CGGCGGCGGC GTGATGGGGG
181 AGGAGGCGCT GAGGCGGTTC CTCCGGGAGG TGCAGGGGGA GGCCGCCGGC GGCGGCGACG
241 ACGAGCTGGA GGCGACGGCG AGGGAGGTGA TGGCCTTCGC GGCGGAGCAG AGGCTGCTCA
301 GGAAGGGCGG CGCCGCTGCC GCCGGCGGCG GGCTCACCGT CGAGGGCTTC CACCGCTGGC
361 TGTGCAGCGA CGCCAACGCT GCACTGGATC CTCAGAAACG GGTATATCAA GACATGGGAT
421 TGCCTCTGTC ACACTACTTC ATCTACACGG GGCACAACTC ATACCTGACG GGGAACCAGC
481 TGAGCAGCGG GTGCAGCGAG GTGCCCATCG TGAAGGCCCT CCACGACGGC GTCCGTGTCA
541 TCGAGCTCGA CCTCTGGCCC AACGCTGCCA AGGACGCCGT CGAGGTCCTC CACGGCAGGA
601 CGCTGACATC GCCGGTGGGT CTGATGAAGT GCCTTGAGGC CATCAGGGAG TACGCGTTCG
661 TCGCCTCCCC TTACCCCGTC ATCCTCACCC TCGAAGATCA CCTCACTCCC GACCTCCAAT
721 C
Predicted gene structure (within gDNA segment 69349 to 72983):
Exon 1 69649 70049 ( 401 n); cDNA 1 401 ( 401 n); score: 0.998
Intron 1 70050 71525 (1476 n); Pd: 1.000 (s: 1.00), Pa: 0.978 (s: 1.00)
Exon 2 71526 71722 ( 197 n); cDNA 402 598 ( 197 n); score: 1.000
Intron 2 71723 72555 ( 833 n); Pd: 0.872 (s: 1.00), Pa: 0.000 (s: 0.96)
Exon 3 72556 72678 ( 123 n); cDNA 599 721 ( 123 n); score: 0.984
MATCH AC129720+ 29614363+ 0.996 721 1.000 C
PGS_AC129720+_29614363+ (69649 70049,71526 71722,72556 72678)
Alignment (genomic DNA sequence = upper lines):
AGCTTAGCTA GCTAAAAAGT AAGTAGCCGT GCGAAGTCGC CGGCGGTGAT CAGCCGGCGA 69708
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGCTTAGCTA GCTAAAAAGT AAGTAGCCGT GCGAAGTCGC CGGCGGTGAT CAGCCGGCGA 60
TGACGACGTA CAGGGTGTGC TGCTTCCTGC GGCGGTTCAG GGCGGCGTCG AACGAGCCGT 69768
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||||
TGACGACGTA CAGGGTGTGC TGCTTCCTGC GGCGGTTCAG GGCGGCGTCT AACGAGCCGT 120
CGGAGGAGCT CGGCGACGTG TTCCAGGCGT ACGCCGACGG CGGCGGCGGC GTGATGGGGG 69828
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGAGGAGCT CGGCGACGTG TTCCAGGCGT ACGCCGACGG CGGCGGCGGC GTGATGGGGG 180
AGGAGGCGCT GAGGCGGTTC CTCCGGGAGG TGCAGGGGGA GGCCGCCGGC GGCGGCGACG 69888
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGAGGCGCT GAGGCGGTTC CTCCGGGAGG TGCAGGGGGA GGCCGCCGGC GGCGGCGACG 240
ACGAGCTGGA GGCGACGGCG AGGGAGGTGA TGGCCTTCGC GGCGGAGCAG AGGCTGCTCA 69948
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACGAGCTGGA GGCGACGGCG AGGGAGGTGA TGGCCTTCGC GGCGGAGCAG AGGCTGCTCA 300
GGAAGGGCGG CGCCGCTGCC GCCGGCGGCG GGCTCACCGT CGAGGGCTTC CACCGCTGGC 70008
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGAAGGGCGG CGCCGCTGCC GCCGGCGGCG GGCTCACCGT CGAGGGCTTC CACCGCTGGC 360
TGTGCAGCGA CGCCAACGCT GCACTGGATC CTCAGAAACG GGTACGTACT TAATTTACGT 70068
|||||||||| |||||||||| |||||||||| |||||||||| |
TGTGCAGCGA CGCCAACGCT GCACTGGATC CTCAGAAACG G......... .......... 401
GATTAGTTAG CTAATTAAAC TCGTAATTAA CACCTAATTA ATCATGATTA TGCATGGATT 70128
.......... .......... .......... .......... .......... .......... 401
CGACGATCTC TTCCTCCATC ATATAGCTTA ATTAGCTACT CTTGTGTTCA ATAGATACTA 70188
.......... .......... .......... .......... .......... .......... 401
CTATTAACAA ATGAGTGTGA AATCAATCTG TAATAATAAT AATAATAATA ATAATAATAA 70248
.......... .......... .......... .......... .......... .......... 401
TAATAATAAT AATAATAATA ATAATAATAA TAATAATTGA TAATAATGCT CCTCCTATGC 70308
.......... .......... .......... .......... .......... .......... 401
TTTTCCTTTT TTTTTTACGG AAGAATGTAG AGTAGGCTTT ACCTTATAGT CATTTCATTA 70368
.......... .......... .......... .......... .......... .......... 401
ATAGAAATGA GGTTTACAGA TTACATATTA GGTGTGGGAA TCATCAGAGA GAAAAAAAGA 70428
.......... .......... .......... .......... .......... .......... 401
ACAAAAAGCA GAACAAACCA AAACAGAAAA AGAGATAATT TACAGATATA TGTACATGCC 70488
.......... .......... .......... .......... .......... .......... 401
TATGTTCTTC TATAGAAACT ATATCCCAGT TACTTATTAT GCGTATATAT ATAAGGAATT 70548
.......... .......... .......... .......... .......... .......... 401
AATTCACATT CAGGAGCAAC TAGGCAAGGC CTTCATCGTC AGATACTGTA CATGGATAAT 70608
.......... .......... .......... .......... .......... .......... 401
CATACAGAGG CTAACCATGG CCATGCAACC TAGGGACCAT GGATGAGCTC TCACAAGCGC 70668
.......... .......... .......... .......... .......... .......... 401
CTCCAAAACA AAAGAAGATA AGGTCCCTAG TCATATGAGA ATGGAGAACA GGTCGATGAT 70728
.......... .......... .......... .......... .......... .......... 401
ATTGGAATAA GTGAATTCCC GTCTTTCATT ATCAGTCTAA ATTTTTTATT CAAACCAATT 70788
.......... .......... .......... .......... .......... .......... 401
GACGCATGCA ACTCAATATA GTATCAGTCC CAAGTTTAAA CCCTAGTTGG CATATAATTA 70848
.......... .......... .......... .......... .......... .......... 401
AATAAAAAAT ACAACATATT TCTATCTGAG GTTTGAGGGG ACCTCGTGTG AAGGGAAGTG 70908
.......... .......... .......... .......... .......... .......... 401
TTGAAATATA AGTGAATTGT CCGTTTTTCT TCATCAGCTT AAACTTTTGG GTTAAACTGT 70968
.......... .......... .......... .......... .......... .......... 401
TCGGGATGTA TTACACAATA GTGAAAAGAA TCTGTGTATA CAACTCAATG GTGTGAAGGA 71028
.......... .......... .......... .......... .......... .......... 401
GAAATTGGTC GAGTCTATAG AGGGGTCGGT GCGTACAACT CAATCGTGGG AAGTGAAGAG 71088
.......... .......... .......... .......... .......... .......... 401
GAGGTCGGTG TGTACAACTC AACAGTGGGA AGTGAAGAGG GAGGTTGGTG TGTACAACTC 71148
.......... .......... .......... .......... .......... .......... 401
TATTTTTTTA GATAAAGACA ACTCAATTAA TAGTGGGAAG TAGGGGGGGG GGGAAGGAGG 71208
.......... .......... .......... .......... .......... .......... 401
GGGGGATCGG TGTGTACAAT TCAATAGTGT AGAAGGGGAA ATTCAGATGA GCATGTTGCT 71268
.......... .......... .......... .......... .......... .......... 401
GCCCATGCGC AGAGCTACGA GAAGACTGCT TTTGCGGTTT CGCCTAGGAC ACATGCCATG 71328
.......... .......... .......... .......... .......... .......... 401
TGAAAATATC AAGTCCTTTC GGTGAGCGAA GGACCGAAGT CCTACATAAC TTTTTCCCTT 71388
.......... .......... .......... .......... .......... .......... 401
GTTTGGTACT CGATAAACCA AAACCAAACC GTAAAAACTG AATATATATT CATGTAAAAA 71448
.......... .......... .......... .......... .......... .......... 401
AATAATCCTC GCTATACAAA TAAGTTGAAA GATATAGCTA CAAAATAAGC AGATGTCTCT 71508
.......... .......... .......... .......... .......... .......... 401
CTATGTTATG GGTGCAGGTA TATCAAGACA TGGGATTGCC TCTGTCACAC TACTTCATCT 71568
||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .......GTA TATCAAGACA TGGGATTGCC TCTGTCACAC TACTTCATCT 444
ACACGGGGCA CAACTCATAC CTGACGGGGA ACCAGCTGAG CAGCGGGTGC AGCGAGGTGC 71628
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACACGGGGCA CAACTCATAC CTGACGGGGA ACCAGCTGAG CAGCGGGTGC AGCGAGGTGC 504
CCATCGTGAA GGCCCTCCAC GACGGCGTCC GTGTCATCGA GCTCGACCTC TGGCCCAACG 71688
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCATCGTGAA GGCCCTCCAC GACGGCGTCC GTGTCATCGA GCTCGACCTC TGGCCCAACG 564
CTGCCAAGGA CGCCGTCGAG GTCCTCCACG GCAGGTGATC CGCTCGATCA ACCACCATCC 71748
|||||||||| |||||||||| |||||||||| ||||
CTGCCAAGGA CGCCGTCGAG GTCCTCCACG GCAG...... .......... .......... 598
TACCTTCCTC CAATCTCCAT TGCATCCTTA ATTTCAATTC ACGACAGATT TTTGCTATAC 71808
.......... .......... .......... .......... .......... .......... 598
GACACTAGTC CCTTTGTCCA CAGATTTTGA GCAATTTTAC CCATCCTATA TTTATACCTC 71868
.......... .......... .......... .......... .......... .......... 598
GAGGTACCAC ATTTTGCACA TAAAATTTTA ATACCTTGGA TATCAACTTT TACACTATAA 71928
.......... .......... .......... .......... .......... .......... 598
AGTACCTCGA GGTACCCAAA AATTGGTACC AAATATTGGA CGCTAAAATT ACTCTAATTT 71988
.......... .......... .......... .......... .......... .......... 598
TTTGTTTTAA TTTTCCATTT CAATCGTCCT CTCATGTAAT TTCATCATCT ACTACTCATC 72048
.......... .......... .......... .......... .......... .......... 598
CTAACTAGGC GATGAAAATC GTGGTATGAA TTTTATCTTA ATTTTATTAT ATTCTAAAAC 72108
.......... .......... .......... .......... .......... .......... 598
ATTAAAATAC TCATATTTTT TGGATGAAAG TAGCTGTTAA CTATGTTAAT TTGTGAAATT 72168
.......... .......... .......... .......... .......... .......... 598
TATGTTCAAT ATAACAGTGC CTATGATTAA AAGTGCATTA AAATTAAAAA AAAGGTTTAG 72228
.......... .......... .......... .......... .......... .......... 598
TGGCCATCCT AGCCGTTGTG TATTTGCTGA TGGGTTGTCC TAAATTAATT AATTAGAAAA 72288
.......... .......... .......... .......... .......... .......... 598
CCAAATTAAC TACTGCAGAT TCAACGAATT AAATTAAATT AATGAAATGG AAACAAGACC 72348
.......... .......... .......... .......... .......... .......... 598
AAACTATGGA CCTATATGGG CCAAAATAAA TCTACCGGCC CGTCATTAGG AGATAGAGTA 72408
.......... .......... .......... .......... .......... .......... 598
GGCCCATGGG CAATGAGGTG GCCCATGGGC CGCGTCCATC ACCGGCCTGC TTCACGACGC 72468
.......... .......... .......... .......... .......... .......... 598
CGCCGCGCGC GCCGCGACCC GTCGGCTTCA GCTCACCGTT GCCAGCCGTC GCCGGAGAAG 72528
.......... .......... .......... .......... .......... .......... 598
AAGCTGACGA CGATTTCGCT CCCGCAGGAC GCTGACATCG CCAGTGGGTC TGATGAAATG 72588
||| |||||||||| || ||||||| ||||||| ||
.......... .......... .......GAC GCTGACATCG CCGGTGGGTC TGATGAAGTG 631
CCTTGAGGCC ATCAGGGAGT ACGCGTTCGT CGCCTCCCCT TACCCCGTCA TCCTCACCCT 72648
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCTTGAGGCC ATCAGGGAGT ACGCGTTCGT CGCCTCCCCT TACCCCGTCA TCCTCACCCT 691
CGAAGATCAC CTCACTCCCG ACCTCCAATC 72678
|||||||||| |||||||||| ||||||||||
CGAAGATCAC CTCACTCCCG ACCTCCAATC 721
hqPGS_AC129720+_29614363+ (69649 70049,71526 71722,72556 72678)
<A NAME="PGS6@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 6 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=8335067" TARGET="NUCLEOTIDE SEQUENCE SEARCH">8335067+</A>)
1 CGACGCCAAC GCTGCACTGG ATCCTCAGAA ACGGCTGGCT TAGAAGGGCA GGTGGTCCGT
61 TGGCAACTTG GCATTGCGGT TGCCTAGGCA GAGGCAACCT AGGGACCATG GATGAGCTCT
121 CACAAGCGCC TCCAAAACAA AAGAAGATAA GGTCCCTGGT CATATGAGAA TGGAGAACAG
181 GTCGATGATG TTGGAATAAG TATATCAAGA CATGGGATTG CCTCTGTCAC ACTACTTCAT
241 CTACACGGGG CACAACTCAT ACCTGACGGG GAACCAGCTG AGCAGCGGGT GCAGCGAGGT
301 GCCCATCGTG AAGGCCCTCC ACGACGGCGT CCGTGTCATC GAGCTCGACC TCTGGCCCAA
361 CGCTGCCAAG GACGCCGTCG AGGTCCTCCA CGGCAGGACG CTGACATCGC CGGTGGGTCT
421 GATGAAGTGC CTTGAGGCCA TCAGGGAGTA CGCGTTCGTC GCCTCCCCTT ACCCCGTCAT
481 CCTCACCCTC GAAGATCACC TCACTCCCGA CCTCCAATCC AAAGTCGCCA AGATGATCAA
541 GGAGACGTTC GGTGACATGC TCTACGTCTC TGAAACTGAG AACATGGCGG AATTCCCTTC
601 GCCGGACGAG CTCAAGGTTG AAGATCATCG TGTCGACGAA GCCCGCCCAG GAGTACCTTC
661 AGACCAAGAA CGACGCCCGC GCCCGACCAG GCCGGCGTTT GGGGCGAGGA GATCACCGAC
721 GACAAGGTGG GGGCGACGGC GATGACCACA GAAGAGAAAA TCGCGGCTGC CGGAGGAAGA
781 ATTTCCCCCC TCCGCCTTTA ACAGGGAGTG CATGAGGGCC TAAACGCCAA TAAAACCCAT
841 CACGGGGTGG AAAACAATTC AGTGCCCCTA T
Predicted gene structure (within gDNA segment 69716 to 73875):
Exon 1 70633 70738 ( 106 n); cDNA 94 199 ( 106 n); score: 0.981
Intron 1 70739 71525 ( 787 n); Pd: 0.920 (s: 0.96), Pa: 0.978 (s: 1.00)
Exon 2 71526 71722 ( 197 n); cDNA 200 396 ( 197 n); score: 1.000
Intron 2 71723 72555 ( 833 n); Pd: 0.872 (s: 1.00), Pa: 0.000 (s: 0.96)
Exon 3 72556 72691 ( 136 n); cDNA 397 532 ( 136 n); score: 0.985
Intron 3 72692 72785 ( 94 n); Pd: 0.704 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 4 72786 73123 ( 338 n); cDNA 533 871 ( 339 n); score: 0.843
MATCH AC129720+ 8335067+ 0.927 777 0.892 C
PGS_AC129720+_8335067+ (70633 70738,71526 71722,72556 72691,72786 73123)
Alignment (genomic DNA sequence = upper lines):
GCAACCTAGG GACCATGGAT GAGCTCTCAC AAGCGCCTCC AAAACAAAAG AAGATAAGGT 70692
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCAACCTAGG GACCATGGAT GAGCTCTCAC AAGCGCCTCC AAAACAAAAG AAGATAAGGT 153
CCCTAGTCAT ATGAGAATGG AGAACAGGTC GATGATATTG GAATAAGTGA ATTCCCGTCT 70752
|||| ||||| |||||||||| |||||||||| |||||| ||| ||||||
CCCTGGTCAT ATGAGAATGG AGAACAGGTC GATGATGTTG GAATAA.... .......... 199
TTCATTATCA GTCTAAATTT TTTATTCAAA CCAATTGACG CATGCAACTC AATATAGTAT 70812
.......... .......... .......... .......... .......... .......... 199
CAGTCCCAAG TTTAAACCCT AGTTGGCATA TAATTAAATA AAAAATACAA CATATTTCTA 70872
.......... .......... .......... .......... .......... .......... 199
TCTGAGGTTT GAGGGGACCT CGTGTGAAGG GAAGTGTTGA AATATAAGTG AATTGTCCGT 70932
.......... .......... .......... .......... .......... .......... 199
TTTTCTTCAT CAGCTTAAAC TTTTGGGTTA AACTGTTCGG GATGTATTAC ACAATAGTGA 70992
.......... .......... .......... .......... .......... .......... 199
AAAGAATCTG TGTATACAAC TCAATGGTGT GAAGGAGAAA TTGGTCGAGT CTATAGAGGG 71052
.......... .......... .......... .......... .......... .......... 199
GTCGGTGCGT ACAACTCAAT CGTGGGAAGT GAAGAGGAGG TCGGTGTGTA CAACTCAACA 71112
.......... .......... .......... .......... .......... .......... 199
GTGGGAAGTG AAGAGGGAGG TTGGTGTGTA CAACTCTATT TTTTTAGATA AAGACAACTC 71172
.......... .......... .......... .......... .......... .......... 199
AATTAATAGT GGGAAGTAGG GGGGGGGGGA AGGAGGGGGG GATCGGTGTG TACAATTCAA 71232
.......... .......... .......... .......... .......... .......... 199
TAGTGTAGAA GGGGAAATTC AGATGAGCAT GTTGCTGCCC ATGCGCAGAG CTACGAGAAG 71292
.......... .......... .......... .......... .......... .......... 199
ACTGCTTTTG CGGTTTCGCC TAGGACACAT GCCATGTGAA AATATCAAGT CCTTTCGGTG 71352
.......... .......... .......... .......... .......... .......... 199
AGCGAAGGAC CGAAGTCCTA CATAACTTTT TCCCTTGTTT GGTACTCGAT AAACCAAAAC 71412
.......... .......... .......... .......... .......... .......... 199
CAAACCGTAA AAACTGAATA TATATTCATG TAAAAAAATA ATCCTCGCTA TACAAATAAG 71472
.......... .......... .......... .......... .......... .......... 199
TTGAAAGATA TAGCTACAAA ATAAGCAGAT GTCTCTCTAT GTTATGGGTG CAGGTATATC 71532
|||||||
.......... .......... .......... .......... .......... ...GTATATC 206
AAGACATGGG ATTGCCTCTG TCACACTACT TCATCTACAC GGGGCACAAC TCATACCTGA 71592
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAGACATGGG ATTGCCTCTG TCACACTACT TCATCTACAC GGGGCACAAC TCATACCTGA 266
CGGGGAACCA GCTGAGCAGC GGGTGCAGCG AGGTGCCCAT CGTGAAGGCC CTCCACGACG 71652
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGGGAACCA GCTGAGCAGC GGGTGCAGCG AGGTGCCCAT CGTGAAGGCC CTCCACGACG 326
GCGTCCGTGT CATCGAGCTC GACCTCTGGC CCAACGCTGC CAAGGACGCC GTCGAGGTCC 71712
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCGTCCGTGT CATCGAGCTC GACCTCTGGC CCAACGCTGC CAAGGACGCC GTCGAGGTCC 386
TCCACGGCAG GTGATCCGCT CGATCAACCA CCATCCTACC TTCCTCCAAT CTCCATTGCA 71772
||||||||||
TCCACGGCAG .......... .......... .......... .......... .......... 396
TCCTTAATTT CAATTCACGA CAGATTTTTG CTATACGACA CTAGTCCCTT TGTCCACAGA 71832
.......... .......... .......... .......... .......... .......... 396
TTTTGAGCAA TTTTACCCAT CCTATATTTA TACCTCGAGG TACCACATTT TGCACATAAA 71892
.......... .......... .......... .......... .......... .......... 396
ATTTTAATAC CTTGGATATC AACTTTTACA CTATAAAGTA CCTCGAGGTA CCCAAAAATT 71952
.......... .......... .......... .......... .......... .......... 396
GGTACCAAAT ATTGGACGCT AAAATTACTC TAATTTTTTG TTTTAATTTT CCATTTCAAT 72012
.......... .......... .......... .......... .......... .......... 396
CGTCCTCTCA TGTAATTTCA TCATCTACTA CTCATCCTAA CTAGGCGATG AAAATCGTGG 72072
.......... .......... .......... .......... .......... .......... 396
TATGAATTTT ATCTTAATTT TATTATATTC TAAAACATTA AAATACTCAT ATTTTTTGGA 72132
.......... .......... .......... .......... .......... .......... 396
TGAAAGTAGC TGTTAACTAT GTTAATTTGT GAAATTTATG TTCAATATAA CAGTGCCTAT 72192
.......... .......... .......... .......... .......... .......... 396
GATTAAAAGT GCATTAAAAT TAAAAAAAAG GTTTAGTGGC CATCCTAGCC GTTGTGTATT 72252
.......... .......... .......... .......... .......... .......... 396
TGCTGATGGG TTGTCCTAAA TTAATTAATT AGAAAACCAA ATTAACTACT GCAGATTCAA 72312
.......... .......... .......... .......... .......... .......... 396
CGAATTAAAT TAAATTAATG AAATGGAAAC AAGACCAAAC TATGGACCTA TATGGGCCAA 72372
.......... .......... .......... .......... .......... .......... 396
AATAAATCTA CCGGCCCGTC ATTAGGAGAT AGAGTAGGCC CATGGGCAAT GAGGTGGCCC 72432
.......... .......... .......... .......... .......... .......... 396
ATGGGCCGCG TCCATCACCG GCCTGCTTCA CGACGCCGCC GCGCGCGCCG CGACCCGTCG 72492
.......... .......... .......... .......... .......... .......... 396
GCTTCAGCTC ACCGTTGCCA GCCGTCGCCG GAGAAGAAGC TGACGACGAT TTCGCTCCCG 72552
.......... .......... .......... .......... .......... .......... 396
CAGGACGCTG ACATCGCCAG TGGGTCTGAT GAAATGCCTT GAGGCCATCA GGGAGTACGC 72612
||||||| |||||||| | |||||||||| ||| |||||| |||||||||| ||||||||||
...GACGCTG ACATCGCCGG TGGGTCTGAT GAAGTGCCTT GAGGCCATCA GGGAGTACGC 453
GTTCGTCGCC TCCCCTTACC CCGTCATCCT CACCCTCGAA GATCACCTCA CTCCCGACCT 72672
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTCGTCGCC TCCCCTTACC CCGTCATCCT CACCCTCGAA GATCACCTCA CTCCCGACCT 513
CCAATCCAAA GTCGCCAAGG TGAACACGCA TTTGCCATCT CGATCACCTC ACCTTCTTCT 72732
|||||||||| |||||||||
CCAATCCAAA GTCGCCAAG. .......... .......... .......... .......... 532
TCCTCCATAT ACTGACAATG GCGGCATCGA TCGATGGATT TTCACTCGCG CAGATGATCA 72792
|||||||
.......... .......... .......... .......... .......... ...ATGATCA 539
AGGAGACGTT CGGTGACATG CTCTACGTCT CTGAAACTGA GAACATGGCG GAATTCCCTT 72852
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGAGACGTT CGGTGACATG CTCTACGTCT CTGAAACTGA GAACATGGCG GAATTCCCTT 599
CGCCGGACGA GCTCAAGG-G GAAGATCATC GTGTCGACGA AGCCGCCCAA GGAGTACCTC 72911
|||||||||| |||||||| |||||||||| |||||||||| |||| || | |||||||||
CGCCGGACGA GCTCAAGGTT GAAGATCATC GTGTCGACGA AGCCCGCCCA GGAGTACCTT 659
CAGACCAAGA ACGACGCCGA CG-CCGACGA GGCCGGCGTC TGGGGCGAGG AGATCACCGA 72970
|||||||||| |||||||| || ||||| | ||||||||| |||||||||| ||||||||||
CAGACCAAGA ACGACGCCCG CGCCCGACCA GGCCGGCGTT TGGGGCGAGG AGATCACCGA 719
CGACAAGGTG GCGGCGACGG CGATGACGAC AGAAGAGAAA TGCGCGGC-G GCGGAGGAAG 73029
|||||||||| | |||||||| ||||||| || |||||||||| |||||| | |||||||||
CGACAAGGTG GGGGCGACGG CGATGACCAC AGAAGAGAAA ATCGCGGCTG CCGGAGGAAG 779
CAGTCGCCGC CGCCGCCGTC GACGAGGAGA TGCAGGAGGC CGAGACGGAC AAGAAGACGC 73089
| | || | | ||||| | || |||| |||| |||| | | | | || || || |
AATTTCCCCC CTCCGCCTTT AACAGGGAG- TGCATGAGGG CCTAAACGCC AATAAAACCC 838
AGCACGGGGT GGACAACGAG TACAGGCGCC TCAT 73123
| |||||||| ||| ||| | | ||| || ||
ATCACGGGGT GGAAAAC-AA TTCAGTGCCC CTAT 871
hqPGS_AC129720+_8335067+ (70633 70738,71526 71722,72556 72691,72786 73123)
<A NAME="PGS7@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 7 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=25800312" TARGET="NUCLEOTIDE SEQUENCE SEARCH">25800312+</A>)
1 GTGGACGACT TCCACCGATT CCTCTTCTCC CACGAGCTGA ACCCACCCAT CCGGCACGGG
61 CAGGGGCAGG TGCACCACGA CATGGCCGCC CCGCTCTCCC ACTACTTCAT CTACACCGGC
121 CACAACTCCT ACCTCACCGG CAACCAGCTC AGCAGCGACT GCAGCGACCT CCCCATCATC
181 AGGGCTCTCC AGAGGGGCGT CCGCGTCATC GAGCTCGACA TGTGGCCCAA CTCCTCCAAG
241 GATGACATCA GCATCCTCCA TGGCAGGACG CTCACCACCC CGGTCTCCCT CCTCAAATGC
301 CTCCTCTCCA TCAAGCAACA CGCCTTTGAG GCCTCCCCTT ACCCGGTTAT CATCACGCTC
361 GAAGACCACC TCACCCCCGA TCTCCAGGAC AAAGCAGCCA AGATGGTTCT TGAAGTTTTC
421 GGCGACATCC TCTACTACCC TGACAAAGAT CACCTCANAG AGTTCCCTTC GCCTCAAGAC
481 CTCAAGGGCC GTGTCCTCCT CTCCACCAAG CCCCCCAGGG AGTACCTTCA AGCCAAGGAT
541 GGTAATGCTG CCACCATCAN AGAGGACGCC NAGGCCGCCG CCACTGACGA TGCCGCATGG
601 GGGAAAAGAA TCCCAGA
Predicted gene structure (within gDNA segment 70761 to 73767):
Exon 1 71526 71722 ( 197 n); cDNA 70 266 ( 197 n); score: 0.766
Intron 1 71723 72555 ( 833 n); Pd: 0.872 (s: 0.74), Pa: 0.000 (s: 0.62)
Exon 2 72556 72691 ( 136 n); cDNA 267 402 ( 136 n); score: 0.728
Intron 2 72692 72785 ( 94 n); Pd: 0.704 (s: 0.82), Pa: 0.000 (s: 0.62)
Exon 3 72786 72920 ( 135 n); cDNA 403 537 ( 135 n); score: 0.674
MATCH AC129720+ 25800312+ 0.729 468 0.759 C
PGS_AC129720+_25800312+ (71526 71722,72556 72691,72786 72920)
Alignment (genomic DNA sequence = upper lines):
GTATATCAAG ACATGGGATT GCCTCTGTCA CACTACTTCA TCTACACGGG GCACAACTCA 71585
|| | || | |||||| || || || |||||||||| ||||||| || ||||||||
GTGCACCACG ACATGGCCGC CCCGCTCTCC CACTACTTCA TCTACACCGG CCACAACTCC 129
TACCTGACGG GGAACCAGCT GAGCAGCGGG TGCAGCGAGG TGCCCATCGT GAAGGCCCTC 71645
||||| || | | |||||||| ||||||| |||||||| | |||||| | | ||| |||
TACCTCACCG GCAACCAGCT CAGCAGCGAC TGCAGCGACC TCCCCATCAT CAGGGCTCTC 189
CACGACGGCG TCCGTGTCAT CGAGCTCGAC CTCTGGCCCA ACGCTGCCAA GGACGCCGTC 71705
|| |||| |||| ||||| |||||||||| | ||||||| || | |||| ||| | | ||
CAGAGGGGCG TCCGCGTCAT CGAGCTCGAC ATGTGGCCCA ACTCCTCCAA GGATGACATC 249
GAGGTCCTCC ACGGCAGGTG ATCCGCTCGA TCAACCACCA TCCTACCTTC CTCCAATCTC 71765
|||||| | |||||
AGCATCCTCC ATGGCAG... .......... .......... .......... .......... 266
CATTGCATCC TTAATTTCAA TTCACGACAG ATTTTTGCTA TACGACACTA GTCCCTTTGT 71825
.......... .......... .......... .......... .......... .......... 266
CCACAGATTT TGAGCAATTT TACCCATCCT ATATTTATAC CTCGAGGTAC CACATTTTGC 71885
.......... .......... .......... .......... .......... .......... 266
ACATAAAATT TTAATACCTT GGATATCAAC TTTTACACTA TAAAGTACCT CGAGGTACCC 71945
.......... .......... .......... .......... .......... .......... 266
AAAAATTGGT ACCAAATATT GGACGCTAAA ATTACTCTAA TTTTTTGTTT TAATTTTCCA 72005
.......... .......... .......... .......... .......... .......... 266
TTTCAATCGT CCTCTCATGT AATTTCATCA TCTACTACTC ATCCTAACTA GGCGATGAAA 72065
.......... .......... .......... .......... .......... .......... 266
ATCGTGGTAT GAATTTTATC TTAATTTTAT TATATTCTAA AACATTAAAA TACTCATATT 72125
.......... .......... .......... .......... .......... .......... 266
TTTTGGATGA AAGTAGCTGT TAACTATGTT AATTTGTGAA ATTTATGTTC AATATAACAG 72185
.......... .......... .......... .......... .......... .......... 266
TGCCTATGAT TAAAAGTGCA TTAAAATTAA AAAAAAGGTT TAGTGGCCAT CCTAGCCGTT 72245
.......... .......... .......... .......... .......... .......... 266
GTGTATTTGC TGATGGGTTG TCCTAAATTA ATTAATTAGA AAACCAAATT AACTACTGCA 72305
.......... .......... .......... .......... .......... .......... 266
GATTCAACGA ATTAAATTAA ATTAATGAAA TGGAAACAAG ACCAAACTAT GGACCTATAT 72365
.......... .......... .......... .......... .......... .......... 266
GGGCCAAAAT AAATCTACCG GCCCGTCATT AGGAGATAGA GTAGGCCCAT GGGCAATGAG 72425
.......... .......... .......... .......... .......... .......... 266
GTGGCCCATG GGCCGCGTCC ATCACCGGCC TGCTTCACGA CGCCGCCGCG CGCGCCGCGA 72485
.......... .......... .......... .......... .......... .......... 266
CCCGTCGGCT TCAGCTCACC GTTGCCAGCC GTCGCCGGAG AAGAAGCTGA CGACGATTTC 72545
.......... .......... .......... .......... .......... .......... 266
GCTCCCGCAG GACGCTGACA TCGCCAGTGG GTCTGATGAA ATGCCTTGAG GCCATCAGGG 72605
|||||| || | || || || | || |||||| |||||| |
.......... GACGCTCACC ACCCCGGTCT CCCTCCTCAA ATGCCTCCTC TCCATCAAGC 316
AGTACGCGTT CGTCGCCTCC CCTTACCCCG TCATCCTCAC CCTCGAAGAT CACCTCACTC 72665
| |||| || | |||||| |||||||| | | ||| |||| |||||||| |||||||| |
AACACGCCTT TGAGGCCTCC CCTTACCCGG TTATCATCAC GCTCGAAGAC CACCTCACCC 376
CCGACCTCCA ATCCAAAGTC GCCAAGGTGA ACACGCATTT GCCATCTCGA TCACCTCACC 72725
|||| ||||| ||||| ||||||
CCGATCTCCA GGACAAAGCA GCCAAG.... .......... .......... .......... 402
TTCTTCTTCC TCCATATACT GACAATGGCG GCATCGATCG ATGGATTTTC ACTCGCGCAG 72785
.......... .......... .......... .......... .......... .......... 402
ATGATCAAGG AGACGTTCGG TGACATGCTC TACGTCTCTG AAACTGAGAA CATGGCGGAA 72845
||| | | | ||||| ||||| ||| ||| | ||| | | || | | | ||
ATGGTTCTTG AAGTTTTCGG CGACATCCTC TACTACCCTG ACAAAGATCA CCTCANAGAG 462
TTCCCTTCGC CGGACGAGCT CAAGGGGAAG ATCATCGTGT CGACGAAGCC GCCCAAGGAG 72905
|||||||||| | | || || |||||| || || | | | || ||||| |||| ||||
TTCCCTTCGC CTCAAGACCT CAAGGGCCGT GTCCTCCTCT CCACCAAGCC CCCCAGGGAG 522
TACCTCCAGA CCAAG 72920
||||| || |||||
TACCTTCAAG CCAAG 537
hqPGS_AC129720+_25800312+ (71526 71722,72556 72691)
<A NAME="PGS10@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 10 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=3763488" TARGET="NUCLEOTIDE SEQUENCE SEARCH">3763488+</A>)
1 CGAGAAGGCC ATTGTCACCC ATGGAGCTCA CATTATCAGG TTTACGCAGA GGAAATTGCT
61 GAGGATATTC CCTCGGTCGA CGCGCATNAC GTCTTCGAAT TATAATCCTT TGATGGGTTG
121 GAGGTATGGA GTTCAGATGG TTGCAGCAAA CATGCAGGGC CATGGAAGAA AGCTGTGGCT
181 GACTCAGGGG ATGTTCCGAG CAAACGGCGG TTGCGGTTAC GTCAAAAAGC CTGATATTCT
241 GATGAACAAC GATCCAGATA AACTGTTTGA TCCNACATCC AAACNACCAG TAAAGACAAG
301 ACTAAAGGTG ACGGTGTACA TGGGAGACGG ATGGCGATTC GCTTCCGCAA GACACATNTC
361 GACAATGC
Predicted gene structure (within gDNA segment 72920 to 74529):
Exon 1 73220 73258 ( 39 n); cDNA 1 39 ( 39 n); score: 1.000
Intron 1 73259 73366 ( 108 n); Pd: 0.995 (s: 0), Pa: 0.971 (s: 0.98)
Exon 2 73367 73484 ( 118 n); cDNA 40 157 ( 118 n); score: 0.992
Intron 2 73485 73841 ( 357 n); Pd: 0.997 (s: 1.00), Pa: 0.992 (s: 1.00)
Exon 3 73842 73991 ( 150 n); cDNA 158 307 ( 150 n); score: 0.987
Intron 3 73992 74118 ( 127 n); Pd: 0.959 (s: 0.96), Pa: 0.811 (s: 0.98)
Exon 4 74119 74181 ( 63 n); cDNA 308 368 ( 61 n); score: 0.952
MATCH AC129720+ 3763488+ 0.982 370 1.005 C
PGS_AC129720+_3763488+ (73220 73258,73367 73484,73842 73991,74119 74181)
Alignment (genomic DNA sequence = upper lines):
CGAGAAGGCC ATTGTCACCC ATGGAGCTCA CATTATCAGG TGATTTCAGC TTTAGTAACA 73279
|||||||||| |||||||||| |||||||||| |||||||||
CGAGAAGGCC ATTGTCACCC ATGGAGCTCA CATTATCAG. .......... .......... 39
TGACAGGTTT AGTTTGCATG TACAGCTTAT TCTGAACTGA ACTCTGTGTC TGACAGGATT 73339
.......... .......... .......... .......... .......... .......... 39
AGTGTTCTTG TTCTTGTTCT TGTTCAGGTT TACGCAGAGG AAATTGCTGA GGATATTCCC 73399
||| |||||||||| |||||||||| ||||||||||
.......... .......... .......GTT TACGCAGAGG AAATTGCTGA GGATATTCCC 72
TCGGTCGACG CGCATTACGT CTTCGAATTA TAATCCTTTG ATGGGTTGGA GGTATGGAGT 73459
|||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ||||||||||
TCGGTCGACG CGCATNACGT CTTCGAATTA TAATCCTTTG ATGGGTTGGA GGTATGGAGT 132
TCAGATGGTT GCAGCAAACA TGCAGGTAAC TAGTGCAATT TATGTTATTT CTGTCACACT 73519
|||||||||| |||||||||| |||||
TCAGATGGTT GCAGCAAACA TGCAG..... .......... .......... .......... 157
ATTAATAATG GTCTTATTCT GCATGATAAG CACATGAGTC ATCATGTTTA CTTTTTCAGT 73579
.......... .......... .......... .......... .......... .......... 157
TCAGCATTGC AATTGTGTTA CATATAGTGG AGTGGTATTC TATTTAACAA ATCACAACTT 73639
.......... .......... .......... .......... .......... .......... 157
AGTTTGAACT AGTGAACTGG GATATCCTCT TGCAGAGTTG CAGTATAAAA GGATTGTAGC 73699
.......... .......... .......... .......... .......... .......... 157
AAGGAAACAT TTTTTGTGTC TTTTTCTAAA ATCAGGTCTA GCACAAGGAA AGTACTGAAT 73759
.......... .......... .......... .......... .......... .......... 157
AGTTTTTAAA AAAAAGGCTT TGTGAAGATA CATAATAGTT CACCCACTTT GATCTGAGCT 73819
.......... .......... .......... .......... .......... .......... 157
ATCTGCTACC ATTCATGTTC AGGGCCATGG AAGAAAGCTG TGGCTGACTC AGGGGATGTT 73879
|||||||| |||||||||| |||||||||| ||||||||||
.......... .......... ..GGCCATGG AAGAAAGCTG TGGCTGACTC AGGGGATGTT 195
CCGAGCAAAC GGCGGTTGCG GTTACGTCAA AAAGCCTGAT ATTCTGATGA ACAACGATCC 73939
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCGAGCAAAC GGCGGTTGCG GTTACGTCAA AAAGCCTGAT ATTCTGATGA ACAACGATCC 255
AGATAAACTG TTTGATCCTA CATCCAAACT ACCAGTAAAG ACAAGACTAA AGGTAAACTG 73999
|||||||||| |||||||| | ||||||||| |||||||||| |||||||||| ||
AGATAAACTG TTTGATCCNA CATCCAAACN ACCAGTAAAG ACAAGACTAA AG........ 307
GACAAAAGCT AAATTTCCTT TTATTACCGG AAGATCCCAA ATGTGCTACT ACTATTTTTC 74059
.......... .......... .......... .......... .......... .......... 307
ATATCTGCTA CAGTAACTGA AAGTCTGTAA CCATTGTGTC AATGCTACAA AATCTGAAGG 74119
|
.......... .......... .......... .......... .......... .........G 308
TGACGGTGTA CATGGGAGAC GGATGGCGAT TCGACTTCCG CAAGACACAT TTCGACAAAT 74179
|||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||| |||
TGACGGTGTA CATGGGAGAC GGATGGCGAT TCG-CTTCCG CAAGACACAT NTCGAC-AAT 366
GC 74181
||
GC 368
hqPGS_AC129720+_3763488+ (73220 73258,73367 73484,73842 73991,74119 74181)
<A NAME="PGS8@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 8 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=5004967" TARGET="NUCLEOTIDE SEQUENCE SEARCH">5004967+</A>)
1 ATTTTCACTC GCGCAGATGA TCAAGGAGAC GTTCGGTGAC ATGCTCTACG TCTCTGAAAC
61 TGAGAACATG GCGGAATTCC CTTCGCCGGA CGAGCTCAAG GGGAAGATCA TCGTGTCGAC
121 GAAGCCGCCC AAGGAGTACC TCCAGACCAA GAACGACGCC GACGCCGACG AGGCCGGNGT
181 CTGGGGCGAG GAGATCACCG ACGACAAGGT GGCGGCGACG GCGATGACGA CAGAAGAGAA
241 ATGCGCNGCG GCGGAGGAAG CAGTCGCCGC CGCCGTCGTC GACGAGGAGA TGCAGGAGGC
301 CGAGACGGAC AAGAAGACGC AGCACG
Predicted gene structure (within gDNA segment 72470 to 73400):
Exon 1 72770 73095 ( 326 n); cDNA 1 326 ( 326 n); score: 0.991
MATCH AC129720+ 5004967+ 0.991 326 1.000 C
PGS_AC129720+_5004967+ (72770 73095)
Alignment (genomic DNA sequence = upper lines):
ATTTTCACTC GCGCAGATGA TCAAGGAGAC GTTCGGTGAC ATGCTCTACG TCTCTGAAAC 72829
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATTTTCACTC GCGCAGATGA TCAAGGAGAC GTTCGGTGAC ATGCTCTACG TCTCTGAAAC 60
TGAGAACATG GCGGAATTCC CTTCGCCGGA CGAGCTCAAG GGGAAGATCA TCGTGTCGAC 72889
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGAGAACATG GCGGAATTCC CTTCGCCGGA CGAGCTCAAG GGGAAGATCA TCGTGTCGAC 120
GAAGCCGCCC AAGGAGTACC TCCAGACCAA GAACGACGCC GACGCCGACG AGGCCGGCGT 72949
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ||
GAAGCCGCCC AAGGAGTACC TCCAGACCAA GAACGACGCC GACGCCGACG AGGCCGGNGT 180
CTGGGGCGAG GAGATCACCG ACGACAAGGT GGCGGCGACG GCGATGACGA CAGAAGAGAA 73009
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGGGGCGAG GAGATCACCG ACGACAAGGT GGCGGCGACG GCGATGACGA CAGAAGAGAA 240
ATGCGCGGCG GCGGAGGAAG CAGTCGCCGC CGCCGCCGTC GACGAGGAGA TGCAGGAGGC 73069
|||||| ||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||||||||
ATGCGCNGCG GCGGAGGAAG CAGTCGCCGC CGCCGTCGTC GACGAGGAGA TGCAGGAGGC 300
CGAGACGGAC AAGAAGACGC AGCACG 73095
|||||||||| |||||||||| ||||||
CGAGACGGAC AAGAAGACGC AGCACG 326
hqPGS_AC129720+_5004967+ (72770 73095)
<A NAME="PGS9@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 9 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=5004963" TARGET="NUCLEOTIDE SEQUENCE SEARCH">5004963+</A>)
1 ATTTTCACTC GCGCAGATGA TCAAGGAGAC GTTCGGTGAC ATGCTCTACG TCTCTGAAAC
61 TGAGAACATG GCGGAATTCC CTTCGCCGGA CGAGCTCAAG GGGAAGATCA TCGTGTCGAC
121 GAAGCCGCCC AAGGAGTACC TCCAGACCAA GAACGACGCC GACGCCGACG AGGCCGGCGT
181 CTGGGGCGAG GAGATCACCG ACGACAAGGT GGCGGCGACG GCGATGACGA CAGAAGAGAA
241 ATGCGCNGCG GCGGAGGAAG CAGTCGCCGC CGCCGCCGTC GACGAGGAGA TNCAGGAGGC
301 CGAGACGGGA CAAGAAGACG CAGCAC
Predicted gene structure (within gDNA segment 72470 to 73399):
Exon 1 72770 73094 ( 325 n); cDNA 1 326 ( 326 n); score: 0.988
MATCH AC129720+ 5004963+ 0.988 325 0.997 C
PGS_AC129720+_5004963+ (72770 73094)
Alignment (genomic DNA sequence = upper lines):
ATTTTCACTC GCGCAGATGA TCAAGGAGAC GTTCGGTGAC ATGCTCTACG TCTCTGAAAC 72829
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATTTTCACTC GCGCAGATGA TCAAGGAGAC GTTCGGTGAC ATGCTCTACG TCTCTGAAAC 60
TGAGAACATG GCGGAATTCC CTTCGCCGGA CGAGCTCAAG GGGAAGATCA TCGTGTCGAC 72889
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGAGAACATG GCGGAATTCC CTTCGCCGGA CGAGCTCAAG GGGAAGATCA TCGTGTCGAC 120
GAAGCCGCCC AAGGAGTACC TCCAGACCAA GAACGACGCC GACGCCGACG AGGCCGGCGT 72949
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAAGCCGCCC AAGGAGTACC TCCAGACCAA GAACGACGCC GACGCCGACG AGGCCGGCGT 180
CTGGGGCGAG GAGATCACCG ACGACAAGGT GGCGGCGACG GCGATGACGA CAGAAGAGAA 73009
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGGGGCGAG GAGATCACCG ACGACAAGGT GGCGGCGACG GCGATGACGA CAGAAGAGAA 240
ATGCGCGGCG GCGGAGGAAG CAGTCGCCGC CGCCGCCGTC GACGAGGAGA TGCAGGAGGC 73069
|||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| | ||||||||
ATGCGCNGCG GCGGAGGAAG CAGTCGCCGC CGCCGCCGTC GACGAGGAGA TNCAGGAGGC 300
CGAGAC-GGA CAAGAAGACG CAGCAC 73094
|||||| ||| |||||||||| ||||||
CGAGACGGGA CAAGAAGACG CAGCAC 326
hqPGS_AC129720+_5004963+ (72770 73094)
<A NAME="PGS14@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 14 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29623983" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29623983-</A>)
1 CAAAAAGCCT GATATTCTGA TGAACAACGA TCCCGATAAA CTGTTTGATC CTACATCCAA
61 ACTACCAGTA AAGACAAGAC TAAAGGTGAC GGTGTACATG GGAGACGGAT GGCGATTCGA
121 CTTCCGCAAG ACACATTTCG ACAAATGCTC ACCCCCAGAC TTCTATGCAA GGGTGGGTAT
181 AGCCGGAGTA GAAGCAGACA CGAGGATGGA GCAGACGAAG GTGAAGATGG ACACGTGGAT
241 TCCGGCATGG GATCACGAGT TCGAGTTCCC GTTGAGCGTG CCGGAGCTGG CGCTGCTCCG
301 GGTGGAGGTG CACGAGTCCG ACAACCACCA GAAGGACGAC TTCGGCGGGC AGACCTGCCT
361 GCCGGTGTGG GAGCTCCGGC GAGGCATCCG CTCCGTCAGG CTCTGCGACC ACCGCGGCGA
421 GCCCCTCCGC TCCGTCAAGC TCCTCATGCG CTTCGACTTC ACCTGACTAC TCCATCTTCT
481 TCTTCATCAT CGTCATCGTC TTAGTAGTAG TAGTTCCATG TATGATATCA TGAGAGATGA
541 AGCATTGATC GTACTTTTTC CGTCCCGAAA TATAGCAATG TAGGATTAGA TGGAAACATC
601 TTAATACTAT GAATCTGGAT ATGTTCTATC TGATTCTGGT TTGCTATGTT TTAGGACGAA
661 TATAGTACAT AAAATTTTAG AAGTTTTGTT TTAAAAAAGA ATAAATTTTG TGCGAAACGG
721 AAGGTGTGAT TGTACATTTT GTACGTACAT TGTTTGTTGT TGATTAATAA ACGTGTGATA
781 AAAGAGGGAA GGATTCTTTT
Predicted gene structure (within gDNA segment 73602 to 75544):
Exon 1 73907 73991 ( 85 n); cDNA 1 85 ( 85 n); score: 0.988
Intron 1 73992 74118 ( 127 n); Pd: 0.959 (s: 1.00), Pa: 0.811 (s: 1.00)
Exon 2 74119 74205 ( 87 n); cDNA 86 172 ( 87 n); score: 1.000
Intron 2 74206 74615 ( 410 n); Pd: 0.996 (s: 1.00), Pa: 0.382 (s: 1.00)
Exon 3 74616 75244 ( 629 n); cDNA 173 800 ( 628 n); score: 0.989
MATCH AC129720+ 29623983- 0.990 801 1.001 C
PGS_AC129720+_29623983- (73907 73991,74119 74205,74616 75244)
Alignment (genomic DNA sequence = upper lines):
CAAAAAGCCT GATATTCTGA TGAACAACGA TCCAGATAAA CTGTTTGATC CTACATCCAA 73966
|||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||||
CAAAAAGCCT GATATTCTGA TGAACAACGA TCCCGATAAA CTGTTTGATC CTACATCCAA 60
ACTACCAGTA AAGACAAGAC TAAAGGTAAA CTGGACAAAA GCTAAATTTC CTTTTATTAC 74026
|||||||||| |||||||||| |||||
ACTACCAGTA AAGACAAGAC TAAAG..... .......... .......... .......... 85
CGGAAGATCC CAAATGTGCT ACTACTATTT TTCATATCTG CTACAGTAAC TGAAAGTCTG 74086
.......... .......... .......... .......... .......... .......... 85
TAACCATTGT GTCAATGCTA CAAAATCTGA AGGTGACGGT GTACATGGGA GACGGATGGC 74146
|||||||| |||||||||| ||||||||||
.......... .......... .......... ..GTGACGGT GTACATGGGA GACGGATGGC 113
GATTCGACTT CCGCAAGACA CATTTCGACA AATGCTCACC CCCAGACTTC TATGCAAGGG 74206
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||
GATTCGACTT CCGCAAGACA CATTTCGACA AATGCTCACC CCCAGACTTC TATGCAAGG. 172
TTAGCATTCT GATCAATCTC ATGTACTACT TCCGTTTTTT AATAGATGAT GTCATTAACT 74266
.......... .......... .......... .......... .......... .......... 172
TTTAGACACA TGCTTAACCA TTCATCTTAT TCAAAAAGTT TCGTAATTAT AGTTTATTTT 74326
.......... .......... .......... .......... .......... .......... 172
GTTGTGAGTT GTTTTTATCA CTAGAACTAC TTTAAAGCAT GATTTATATC TTATGTATTT 74386
.......... .......... .......... .......... .......... .......... 172
GCAAAAAAAA TTAAATAAGA CGAAGATCAA ACGTGAGCCC AGAAGTTAAC GACGTCTCAT 74446
.......... .......... .......... .......... .......... .......... 172
CTTTTAAAAA ACAAAGAGAG TACTACATAT CTAACAAATT AATCGATTAC CTAAGATGTA 74506
.......... .......... .......... .......... .......... .......... 172
CTGAAACTCT GAATGAGCTG TACACAGAGA AGCAAACTCT GAATGTTCAG TTCAGACTTC 74566
.......... .......... .......... .......... .......... .......... 172
AGACATGGCA AATGGCTGAC AAGAAAAGAA AAACTGAAAA CTACTGCAGG TGGGTATAGC 74626
| ||||||||||
.......... .......... .......... .......... .........G TGGGTATAGC 183
CGGAGTAGAA GCAGACACGA GGATGGAGCA GACGAAGGTG AAGATGGACA CGTGGATTCC 74686
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGAGTAGAA GCAGACACGA GGATGGAGCA GACGAAGGTG AAGATGGACA CGTGGATTCC 243
GGCATGGGAT CACGAGTTCG AGTTCCCGTT GAGCGTGCCG GAGCTGGCGC TGCTCCGGGT 74746
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGCATGGGAT CACGAGTTCG AGTTCCCGTT GAGCGTGCCG GAGCTGGCGC TGCTCCGGGT 303
GGAGGTGCAC GAGTCCGACA ACCACCAGAA GGACGACTTC GGCGGGCAGA CCTGCCTGCC 74806
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGAGGTGCAC GAGTCCGACA ACCACCAGAA GGACGACTTC GGCGGGCAGA CCTGCCTGCC 363
GGTGTGGGAG CTCCGGCGAG GCATCCGCTC CGTCAGGCTC TGCGACCACC GCGGCGAGCC 74866
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTGTGGGAG CTCCGGCGAG GCATCCGCTC CGTCAGGCTC TGCGACCACC GCGGCGAGCC 423
CCTCCGCTCC GTCAAGCTCC TCATGCGCTT CGACTTCACC TGACTACTCC ATCTTCTTCT 74926
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCTCCGCTCC GTCAAGCTCC TCATGCGCTT CGACTTCACC TGACTACTCC ATCTTCTTCT 483
TCATCATCGT CATCGTCTTA GTAGTAGTAG TTCCATGTAT GATATCATGA GGGATGAAGC 74986
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||||||||
TCATCATCGT CATCGTCTTA GTAGTAGTAG TTCCATGTAT GATATCATGA GAGATGAAGC 543
ATTGATCGTA CTTTCTCCGT CCCGAAATAT AGCAATGTAG GATTAGATGG AAACATCTTA 75046
|||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATTGATCGTA CTTTTTCCGT CCCGAAATAT AGCAATGTAG GATTAGATGG AAACATCTTA 603
ATACTACGAA TCTGGATATG TCCTATCTGG TTCTGGTTTG CTATGTTTTA GGACGAATAT 75106
|||||| ||| |||||||||| | ||||||| |||||||||| |||||||||| ||||||||||
ATACTATGAA TCTGGATATG TTCTATCTGA TTCTGGTTTG CTATGTTTTA GGACGAATAT 663
AGTACATAAA ATTTTAGAAG TTTTGTTTTA AAAAAGAATA AATTTTGTGC GAAACGGAAG 75166
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGTACATAAA ATTTTAGAAG TTTTGTTTTA AAAAAGAATA AATTTTGTGC GAAACGGAAG 723
GTGTGATTGT ACATTTTGTA CGTACATTGT TTGTTGTTGA TTAATAAACG TGTTAATAAA 75226
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || | |||||
GTGTGATTGT ACATTTTGTA CGTACATTGT TTGTTGTTGA TTAATAAACG TG-TGATAAA 782
AGAGGGAAGG ATTCTTTT 75244
|||||||||| ||||||||
AGAGGGAAGG ATTCTTTT 800
hqPGS_AC129720+_29623983- (73907 73991,74119 74205,74616 75244)
<A NAME="PGS15@AC129720-69000-75999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 15 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29623943" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29623943-</A>)
1 CGATCCAGAT AAACTGTTTG ATCCTACATC CAAACTACCA GTAAAGACAA GACTAAAGGT
61 GACGGTGTAC ATGGGAGACG GATGGCGATT CGACTTCCGC AAGACACATT TCGACAAATG
121 CTCACCCCCA GACTTCTATG CAAGGGTGGG TATAGCCGGA GTAGAAGCAG ACACGAGGAT
181 GGAGCAGACG AAGGTGAAGA TGGACACGTG GATTCCGGCA TGGGATCACG AGTTCGAGTT
241 CCCGTTGAGC GTGCCGGAGC TGGCGCTGCT CCGGGTGGAG GTGCACGAGT CCGACAACCA
301 CCAGAAGGAC GACTTCGGCG GGCAGACCTG CCTGCCGGTG TGGGAGCTCC GGCGAGGCAT
361 CCGCTCCGTC AGGCTCTGCG ACCACCGCGG CGAGCCCCTC CGCTCCGTCA AGCTCCTCAT
421 GCGCTTCGAC TTCACCTGAC TACTCCATCT TCTTCTTCAT CATCGTCATC GTCTTAGTAG
481 TAGTAGTTCC ATGTATGATA TCATGAGAGA TGAAGCATTG ATCGTACTTT TTCCGTCCCG
541 AAATATAGCA ATGTAGGATT AGATGGAAAC ATCTTAATAC TATGAATCTG GATATGTTCT
601 ATCTGATTCT GGTTTGCTAT GTTTTAGGAC GAATATAGTA CATAAAATTT TAGAAGTTTT
661 GTTTTAAAAA AGAATAAATT TTGTGCGAAA CGGAAGGTGT GATTGTCCTT TTTGTACGTC
721 CATTGTTTGT TGTTGATTAA TAAACGTGTT AATAAAAGAG GGAAGGATTC TTTTAAAAAA
781 AAAAAAAAAA AGGAAAAAAA AACTCGAGGG GGGGCCCGGT ACCCAGCTTT GTC
Predicted gene structure (within gDNA segment 73629 to 75831):
Exon 1 73934 73991 ( 58 n); cDNA 1 58 ( 58 n); score: 1.000
Intron 1 73992 74118 ( 127 n); Pd: 0.959 (s: 1.00), Pa: 0.811 (s: 1.00)
Exon 2 74119 74205 ( 87 n); cDNA 59 145 ( 87 n); score: 1.000
Intron 2 74206 74615 ( 410 n); Pd: 0.996 (s: 1.00), Pa: 0.382 (s: 1.00)
Exon 3 74616 75245 ( 630 n); cDNA 146 775 ( 630 n); score: 0.987
MATCH AC129720+ 29623943- 0.990 775 0.930 C
PGS_AC129720+_29623943- (73934 73991,74119 74205,74616 75245)
Alignment (genomic DNA sequence = upper lines):
CGATCCAGAT AAACTGTTTG ATCCTACATC CAAACTACCA GTAAAGACAA GACTAAAGGT 73993
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||
CGATCCAGAT AAACTGTTTG ATCCTACATC CAAACTACCA GTAAAGACAA GACTAAAG.. 58
AAACTGGACA AAAGCTAAAT TTCCTTTTAT TACCGGAAGA TCCCAAATGT GCTACTACTA 74053
.......... .......... .......... .......... .......... .......... 58
TTTTTCATAT CTGCTACAGT AACTGAAAGT CTGTAACCAT TGTGTCAATG CTACAAAATC 74113
.......... .......... .......... .......... .......... .......... 58
TGAAGGTGAC GGTGTACATG GGAGACGGAT GGCGATTCGA CTTCCGCAAG ACACATTTCG 74173
||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.....GTGAC GGTGTACATG GGAGACGGAT GGCGATTCGA CTTCCGCAAG ACACATTTCG 113
ACAAATGCTC ACCCCCAGAC TTCTATGCAA GGGTTAGCAT TCTGATCAAT CTCATGTACT 74233
|||||||||| |||||||||| |||||||||| ||
ACAAATGCTC ACCCCCAGAC TTCTATGCAA GG........ .......... .......... 145
ACTTCCGTTT TTTAATAGAT GATGTCATTA ACTTTTAGAC ACATGCTTAA CCATTCATCT 74293
.......... .......... .......... .......... .......... .......... 145
TATTCAAAAA GTTTCGTAAT TATAGTTTAT TTTGTTGTGA GTTGTTTTTA TCACTAGAAC 74353
.......... .......... .......... .......... .......... .......... 145
TACTTTAAAG CATGATTTAT ATCTTATGTA TTTGCAAAAA AAATTAAATA AGACGAAGAT 74413
.......... .......... .......... .......... .......... .......... 145
CAAACGTGAG CCCAGAAGTT AACGACGTCT CATCTTTTAA AAAACAAAGA GAGTACTACA 74473
.......... .......... .......... .......... .......... .......... 145
TATCTAACAA ATTAATCGAT TACCTAAGAT GTACTGAAAC TCTGAATGAG CTGTACACAG 74533
.......... .......... .......... .......... .......... .......... 145
AGAAGCAAAC TCTGAATGTT CAGTTCAGAC TTCAGACATG GCAAATGGCT GACAAGAAAA 74593
.......... .......... .......... .......... .......... .......... 145
GAAAAACTGA AAACTACTGC AGGTGGGTAT AGCCGGAGTA GAAGCAGACA CGAGGATGGA 74653
|||||||| |||||||||| |||||||||| ||||||||||
.......... .......... ..GTGGGTAT AGCCGGAGTA GAAGCAGACA CGAGGATGGA 183
GCAGACGAAG GTGAAGATGG ACACGTGGAT TCCGGCATGG GATCACGAGT TCGAGTTCCC 74713
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCAGACGAAG GTGAAGATGG ACACGTGGAT TCCGGCATGG GATCACGAGT TCGAGTTCCC 243
GTTGAGCGTG CCGGAGCTGG CGCTGCTCCG GGTGGAGGTG CACGAGTCCG ACAACCACCA 74773
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTGAGCGTG CCGGAGCTGG CGCTGCTCCG GGTGGAGGTG CACGAGTCCG ACAACCACCA 303
GAAGGACGAC TTCGGCGGGC AGACCTGCCT GCCGGTGTGG GAGCTCCGGC GAGGCATCCG 74833
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAAGGACGAC TTCGGCGGGC AGACCTGCCT GCCGGTGTGG GAGCTCCGGC GAGGCATCCG 363
CTCCGTCAGG CTCTGCGACC ACCGCGGCGA GCCCCTCCGC TCCGTCAAGC TCCTCATGCG 74893
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCCGTCAGG CTCTGCGACC ACCGCGGCGA GCCCCTCCGC TCCGTCAAGC TCCTCATGCG 423
CTTCGACTTC ACCTGACTAC TCCATCTTCT TCTTCATCAT CGTCATCGTC TTAGTAGTAG 74953
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTCGACTTC ACCTGACTAC TCCATCTTCT TCTTCATCAT CGTCATCGTC TTAGTAGTAG 483
TAGTTCCATG TATGATATCA TGAGGGATGA AGCATTGATC GTACTTTCTC CGTCCCGAAA 75013
|||||||||| |||||||||| |||| ||||| |||||||||| ||||||| || ||||||||||
TAGTTCCATG TATGATATCA TGAGAGATGA AGCATTGATC GTACTTTTTC CGTCCCGAAA 543
TATAGCAATG TAGGATTAGA TGGAAACATC TTAATACTAC GAATCTGGAT ATGTCCTATC 75073
|||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||| |||||
TATAGCAATG TAGGATTAGA TGGAAACATC TTAATACTAT GAATCTGGAT ATGTTCTATC 603
TGGTTCTGGT TTGCTATGTT TTAGGACGAA TATAGTACAT AAAATTTTAG AAGTTTTGTT 75133
|| ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGATTCTGGT TTGCTATGTT TTAGGACGAA TATAGTACAT AAAATTTTAG AAGTTTTGTT 663
TTAAAAAAGA ATAAATTTTG TGCGAAACGG AAGGTGTGAT TGTACATTTT GTACGTACAT 75193
|||||||||| |||||||||| |||||||||| |||||||||| ||| | |||| |||||| |||
TTAAAAAAGA ATAAATTTTG TGCGAAACGG AAGGTGTGAT TGTCCTTTTT GTACGTCCAT 723
TGTTTGTTGT TGATTAATAA ACGTGTTAAT AAAAGAGGGA AGGATTCTTT TA 75245
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||
TGTTTGTTGT TGATTAATAA ACGTGTTAAT AAAAGAGGGA AGGATTCTTT TA 775
hqPGS_AC129720+_29623943- (73934 73991,74119 74205,74616 75245)
<A NAME="PGS16@AC129720-69000-75999"></A>
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<A HREF="#HEAD-PGL-AC129720-69000-75999">Scroll down to "Predicted gene locations"</A>
EST sequence 16 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29683995" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29683995-</A>)
1 TGGATCCCCC GGGCTGCAGG AATTCGGCAC GAGGTACCAG TAAAGACAAG ACTAAAGGTG
61 ACGGTGTACA TGGGAGACGG ATGGCGATTC GACTTCCGCA AGACACATTT GGACAAATGC
121 TCACCCCCAG ACTTCTATGC AAGGGTGGGT ATAGCCGGAG TAGAAGCAGA CACGAGGATG
181 GAGCAGACGA AGGTGAAGAT GGACACGTGG ATTCCGGCAT GGGATCACGA GTTCGAGTTC
241 CCGTTGAGCG TGCCGGAGCT GGCGCTGCTC CGGGTGGAGG TGCACGAGTC CGTCAACCAC
301 CAGAAGGACG ACTTCGGCGG GCAGACCTGC CTGCCGGTGT GGGAGCTCCG GCGAGGCATC
361 CGCTCCGTCA GGCTCTGCGA CCACCGCGGC GAGCCCCTCC GGTCCGTCAA GCTCCTCATG
421 CGCTTGGACT TCACCTGACT ACTCCATCTT CTTTTTCATC ATCGTCATCG TCTTAGTAGT
481 AGTAGTTCCA TGTATGATAT CATGAGGGAT GAAGCATTGA TCGTACTTTT TCCGTCCCGA
541 AATATAGCAA TGTAGGATTA GATGGAAACA TCTTAATACT ACGAATCTGG ATATGTCCTA
601 TTTGGTTCTG GTTTGCTATG TTTTAGGGCG AATATAGTAC ATAAAATTTT AGAAGTTTTG
661 TTTTAAAAAA GAATAAATTT TGTGCGAAAC GGAAGGTGTG ATTGTACATT TTGTACGTAC
721 ATTGTTTGTT GTTGATTAAT AACCCGTGTT AATAAAAGAG GGAAGGATTC TTTTAAAAAA
781 AAAGAAAAAA GGAAAAAAAA ATCTCGAGGG GGGGCCCGGT ACCCAGCTTT GTC
Predicted gene structure (within gDNA segment 73494 to 75831):
Exon 1 73969 73991 ( 23 n); cDNA 35 57 ( 23 n); score: 1.000
Intron 1 73992 74118 ( 127 n); Pd: 0.959 (s: 0), Pa: 0.811 (s: 1.00)
Exon 2 74119 74205 ( 87 n); cDNA 58 144 ( 87 n); score: 0.989
Intron 2 74206 74615 ( 410 n); Pd: 0.996 (s: 0.98), Pa: 0.382 (s: 1.00)
Exon 3 74616 75245 ( 630 n); cDNA 145 775 ( 631 n); score: 0.984
MATCH AC129720+ 29683995- 0.985 740 0.888 C
PGS_AC129720+_29683995- (73969 73991,74119 74205,74616 75245)
Alignment (genomic DNA sequence = upper lines):
TACCAGTAAA GACAAGACTA AAGGTAAACT GGACAAAAGC TAAATTTCCT TTTATTACCG 74028
|||||||||| |||||||||| |||
TACCAGTAAA GACAAGACTA AAG....... .......... .......... .......... 57
GAAGATCCCA AATGTGCTAC TACTATTTTT CATATCTGCT ACAGTAACTG AAAGTCTGTA 74088
.......... .......... .......... .......... .......... .......... 57
ACCATTGTGT CAATGCTACA AAATCTGAAG GTGACGGTGT ACATGGGAGA CGGATGGCGA 74148
|||||||||| |||||||||| ||||||||||
.......... .......... .......... GTGACGGTGT ACATGGGAGA CGGATGGCGA 87
TTCGACTTCC GCAAGACACA TTTCGACAAA TGCTCACCCC CAGACTTCTA TGCAAGGGTT 74208
|||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||
TTCGACTTCC GCAAGACACA TTTGGACAAA TGCTCACCCC CAGACTTCTA TGCAAGG... 144
AGCATTCTGA TCAATCTCAT GTACTACTTC CGTTTTTTAA TAGATGATGT CATTAACTTT 74268
.......... .......... .......... .......... .