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<center><h3><a href="http://www.plantgdb.org/~volker/PLC/OsPLCc/Summary.html" target="_blank">Click here to access the result summary and navigation page</a></h3></center><br>GeneSeqer. Version of May 5, 2004.
Date run: Mon Aug 9 09:40:33 2004
(Bayesian) Splice site model (species): Arabidopsis thaliana
Fast search parameters: MinMatchLen 12, MinQualityHSP 12, MinQualityCHAIN 30.
GenBank file: AP005199
________________________________________________________________________________
<A NAME="AP005199-18000-22999"></A>
Sequence 1: <A HREF="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=Nucleotide&term=AP005199&doptcmdl=GenBank" TARGET="NUCLEOTIDE SEQUENCE SEARCH">AP005199</A>, from 18001 to 23000, reverse strand.
... started at: Mon Aug 9 09:40:33 2004
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST library file: LIBestC; matching gDNA +strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 7
EST library file: LIBestC; matching gDNA -strand ...
... found all matches, elapsed seconds = 0
... matches indexed, elapsed seconds = 0 HitsTableSize = 17
<A NAME="PGS8@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 8 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=12698877" TARGET="NUCLEOTIDE SEQUENCE SEARCH">12698877+</A>)
1 CGGCACGAGG TCCAATTCCA ATTATAATTC CAAGAGGCTC ATCATCAACT CAACTGAAGA
61 AGAAGAAGAA GAAGAAGAAG AAGAAGAGGA GGAGGGTTCG GCACGAGGTG GGAAGGGAGG
121 GGGAGGAGGA AGGCGATCGA TCGGCGATGG GCACGTACAA GTGCTGCCTC ATCTTCAAGC
181 GCCGCTTCCG CTGGAACGAC GCGCCGCCGC CCGACGATGT CCGCGCCCTC TTCGCCAACC
241 ACTCCGCCGG CGGTGGCCCC CACATGGCCG CCGACGGCCT CCGCGCCTAC CTCCAGGCCA
301 CCGGCACGAG GACGGCGACG TGGACATGGA GCGGCTGGTG GAGCAGATCC GGCAGCTGCA
361 GGGGCGCGGC GGGCGCATCC CGCGGGTGGG GCGGGCACTC CCACTCCTGC ACGGTGGACG
421 ACTTCCACCG ATTCCTCTTC TCCCACGAGC TGAACCCACC CATCCGGCAC GGGCAGGGGC
481 AGGTGCACCA CGACATGGCC GCCCCGCTCT CCCACTACTT CATCTACACC GGCCACAACT
541 CCTACCTCAC CGGCAACCAG CTCAGCAGCG ACTGCAGCGA CCTCCCCATC ATCAGGGCTC
601 TCCAGAGGGG CGTCCGCGTC ATCGAGCTCG ACATGTGGCC CAACTCCTCC AAGGATGACA
661 TCAGCATCCT CCATGGCAGG ACGCCCACCA CCCCGGTCTC CCTCCTCAAA TGCCTCCTCT
721 CCATCAAGGA ACACGCCTTT GAGGCCTCCC CTTACCCGGT TATCATCACG CTCGAAGACC
781 ACCTCACCCC CGATCTCCAG GACAAAGCAG CCAAGATGGT TCTTGAAGTT TTCGGCGACA
841 TCCTCTACTA CCCTGACAAA GATCACCTCA AAGAGTTCCC TTCGCCTCAA GACCTCAAGG
901 GCCGTGTCCT CCTCTCCACC AAGCCCCCCA AGGAGTACCT TCAAGCCAAG GATGGTAATG
961 CTGCCACCAT CAAAGAGGAC GCCAAGGCCG CCGCCACTGA CGATGCCGCA TGGGGAAAAG
1021 AAGTCCCAGA TATTCACTCT CAAATCCACT CTGCCACTAA ACATGACCAA AGAGAAGATG
1081 ACGACGACAC CGATGAAGAC GAAGATGACG AGGAGGAGGA GCAGAAAATG CAACAGCATC
1141 TAGCTCCACA GTACAAACAC CTTATTACCA TCAAAGCAGG AAAGCCAAAA GGTACTCTAC
1201 TTGATGCCTT ACAGAGTGAC CCAGAAAAGG TTAGAAGGCT CAGTTTGAGC GAGCAACAAC
1261 TTGCCAAATT GGCAGATCAT CATGGTACCG AAATTGTCAG GTTCACACAG AGAAACCTAC
1321 TGAGGATATA CCCAAAGGGC ACTCGGGTCA CATCATCCAA CTATAATCCA TTTCTTGGTT
1381 GGGTGCATGG TGCTCAGATG GTAGCGTTCA ATATGCAGGG ATATGGAAGA GCTCTTTGGT
1441 TGATGCATGG ATTTTATAAA GCTAATGGTG GCTGTGGTTA TGTGAAGAAA CCAGATTTCT
1501 TAATGCAAAC TGATCCAGAG GTTTTTGACC CAAAAAAATC CCTATCTTCC AAGAAAACCT
1561 TGAAGGTGAA AGTATACATG GGGGATGGTT GGCGGATGGA CTTCACGCAG ACCCACTTTG
1621 ATCAATATTC TCCTCCAGAC TTTTATGCAC GGGTGGGGAT AGCGGGAGTA CCAGCGGACT
1681 CGGTGATGAA GAGAACGAGG GCGATAGAGG ATAACTGGGT GCCGGTGTGG GAGGAGGATT
1741 TCACCTTCAA ACTGACCGTG CCGGAGATCG CGTTGCTGCG GGTGGAGGTG CACGAGTACG
1801 ACATGTCGGA GAAGGACGAC TTCGGCGGCC AGACGGTGCT GCCGGTGTCG GAGCTCATCC
1861 CGGGGATCCG AGCGGTGGCA CTCCACGACC GCAAAGGGAT CAAGTTGAAC AACGTCAAGC
1921 TTCTCATGCG CTTCGAGTTT GAATGACCCA ACACACCGAC ACTTTCTTTC TCGCCGCATT
1981 GCATTGCACT GTGCCTGTGC CTGTGCAGCA TCCATCATTT GGTTTGGTTT TTCATGTTCC
2041 TGTGCATACG CATTTGTGTC TGTACATAGG CTCGGTCCTG TATATTGTTT GTGAGTAACA
2101 TGTAACAATA AGGCTTCACG CCATGTTCAT TCCTCCTGTT TGAACCCCTC CAAATATATT
2161 AATACCGAAG GTACAAAATA TCTCAACGGC AAAAAAAAAA AAAAAAA
Predicted gene structure (within gDNA segment 22249 to 18549):
Exon 1 21893 21091 ( 803 n); cDNA 11 815 ( 805 n); score: 0.981
Intron 1 21090 21029 ( 62 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 2 21028 20783 ( 246 n); cDNA 816 1061 ( 246 n); score: 0.996
Intron 2 20782 20688 ( 95 n); Pd: 0.994 (s: 1.00), Pa: 0.861 (s: 1.00)
Exon 3 20687 20449 ( 239 n); cDNA 1062 1300 ( 239 n); score: 0.996
Intron 3 20448 20312 ( 137 n); Pd: 0.817 (s: 0.98), Pa: 0.859 (s: 1.00)
Exon 4 20311 20194 ( 118 n); cDNA 1301 1418 ( 118 n); score: 1.000
Intron 4 20193 19895 ( 299 n); Pd: 0.842 (s: 1.00), Pa: 0.981 (s: 1.00)
Exon 5 19894 19748 ( 147 n); cDNA 1419 1565 ( 147 n); score: 0.993
Intron 5 19747 19672 ( 76 n); Pd: 0.993 (s: 0.98), Pa: 0.371 (s: 1.00)
Exon 6 19671 19585 ( 87 n); cDNA 1566 1652 ( 87 n); score: 1.000
Intron 6 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 1.00)
Exon 7 19476 18937 ( 540 n); cDNA 1653 2188 ( 536 n); score: 0.985
PPA cDNA 2191 2207
MATCH AP005199- 12698877+ 0.988 2180 0.988 C
PGS_AP005199-_12698877+ (21893 21091,21028 20783,20687 20449,20311 20194,19894 19748,19671 19585,19476 18937)
Alignment (genomic DNA sequence = upper lines):
TCCAATTCCA ATTATAATTC CAAGAGGCTT ATCATCAACT CAACTGAAGA AGAAGAAGAA 21834
|||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||||
TCCAATTCCA ATTATAATTC CAAGAGGCTC ATCATCAACT CAACTGAAGA AGAAGAAGAA 70
GAAGAAGAAG AAGAAGAGGA GGAGGGTTGT GAACTGATTT GGGAAGGGAG GGGGAGGAGG 21774
|||||||||| |||||||||| |||||||| | || || | |||||||||| ||||||||||
GAAGAAGAAG AAGAAGAGGA GGAGGGTTCG GCAC-GAGGT GGGAAGGGAG GGGGAGGAGG 129
AAGGCGATCG ATCGGCGATG GGCACGTACA AGTGCTGCCT CATCTTCAAG CGCCGCTTCC 21714
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAGGCGATCG ATCGGCGATG GGCACGTACA AGTGCTGCCT CATCTTCAAG CGCCGCTTCC 189
GCTGGAACGA CGCGCCGCCG CCCGACGATG TCCGCGCCCT CTTCGCCAAC CACTCCGCCG 21654
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTGGAACGA CGCGCCGCCG CCCGACGATG TCCGCGCCCT CTTCGCCAAC CACTCCGCCG 249
GCGGTGGCCC CCACATGGCC GCCGACGGCC TCCGCGCCTA CCTCCAGGCC ACCGGC-C-A 21596
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| | |
GCGGTGGCCC CCACATGGCC GCCGACGGCC TCCGCGCCTA CCTCCAGGCC ACCGGCACGA 309
GGACGGCGAC GTGGACATGG AGCGGCTGGT GGAGCAGATC CGGCAGCTGC AGGGGCGCGG 21536
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGACGGCGAC GTGGACATGG AGCGGCTGGT GGAGCAGATC CGGCAGCTGC AGGGGCGCGG 369
CGGGCGCATC CCGCGGGTGG GGCGGGCACT CCCACTCCTG -ACGGTGGAC GACTTCCACC 21477
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||||
CGGGCGCATC CCGCGGGTGG GGCGGGCACT CCCACTCCTG CACGGTGGAC GACTTCCACC 429
GATTCCTCTT CTCCCACGAG CTGAACCCAC CCATCCGGCA CGGGCAGGGG CAGGTGCACC 21417
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATTCCTCTT CTCCCACGAG CTGAACCCAC CCATCCGGCA CGGGCAGGGG CAGGTGCACC 489
ACGACATGGC CGCCCCGCTC TCCCACTACT TCATCTACAC CGGCCACAAC TCCTACCTCA 21357
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACGACATGGC CGCCCCGCTC TCCCACTACT TCATCTACAC CGGCCACAAC TCCTACCTCA 549
CCGGCAACCA GCTCAGCAGC GACTGCAGCG ACCTCCCCAT CATCAGGGCT CTCCAGAGGG 21297
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCGGCAACCA GCTCAGCAGC GACTGCAGCG ACCTCCCCAT CATCAGGGCT CTCCAGAGGG 609
GCGTCCGCGT CATCGAGCTC GACATGTGGC CCAACTCCTC CAAGGATGAC ATCAGCATCC 21237
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCGTCCGCGT CATCGAGCTC GACATGTGGC CCAACTCCTC CAAGGATGAC ATCAGCATCC 669
TCCATGGCAG GACGCTCACC ACCCCGGTCT CCCTCCTCAA ATGCCTCCTC TCCATCAAGC 21177
|||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||
TCCATGGCAG GACGCCCACC ACCCCGGTCT CCCTCCTCAA ATGCCTCCTC TCCATCAAGG 729
AACACGCCTT TGAGGCCTCC CCTTACCCGG TTATCATCAC GCTCGAAGAC CACCTCACCC 21117
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AACACGCCTT TGAGGCCTCC CCTTACCCGG TTATCATCAC GCTCGAAGAC CACCTCACCC 789
CCGATCTCCA GGACAAAGCA GCCAAGGTAT ATATAATCTT CTTCTTCTCT CTGTCTCTGC 21057
|||||||||| |||||||||| ||||||
CCGATCTCCA GGACAAAGCA GCCAAG.... .......... .......... .......... 815
CTTGCTCGCT CACTTGCCAA TGGGCCAGAT GGTTCTTGAA GTTTTCGGCG ACATCCTCTA 20997
|| |||||||||| |||||||||| ||||||||||
.......... .......... ........AT GGTTCTTGAA GTTTTCGGCG ACATCCTCTA 847
CTACCCTGAC AAAGATCACC TCAAAGAGTT CCCTTCGCCT CAAGACCTCA AGGGCCGTGT 20937
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTACCCTGAC AAAGATCACC TCAAAGAGTT CCCTTCGCCT CAAGACCTCA AGGGCCGTGT 907
CCTCCTCTCC ACCAAGCCCC CCAGGGAGTA CCTTCAAGCC AAGGATGGTA ATGCTGCCAC 20877
|||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||||
CCTCCTCTCC ACCAAGCCCC CCAAGGAGTA CCTTCAAGCC AAGGATGGTA ATGCTGCCAC 967
CATCAAAGAG GACGCCAAGG CCGCCGCCAC TGACGATGCC GCATGGGGAA AAGAAGTCCC 20817
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CATCAAAGAG GACGCCAAGG CCGCCGCCAC TGACGATGCC GCATGGGGAA AAGAAGTCCC 1027
AGATATTCAC TCTCAAATCC ACTCTGCCAC TAAAGTACTC CTCATATTAC TAGCTTCTTC 20757
|||||||||| |||||||||| |||||||||| ||||
AGATATTCAC TCTCAAATCC ACTCTGCCAC TAAA...... .......... .......... 1061
TTCTTCTTCT TATGCTCATA GTAGAGCCAG TTTCTTACCT GCAGGGCACA CTTTTGTTTC 20697
.......... .......... .......... .......... .......... .......... 1061
ATTCTGCAGC ATGACCAAAG AGAAGATGAC GACGACACCG ATGAAGACGA AGATGACGAG 20637
| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.........C ATGACCAAAG AGAAGATGAC GACGACACCG ATGAAGACGA AGATGACGAG 1112
GAGGAGGAGC AGAAAATGCA ACAGCATCTA GCTCCACAGT ACAAACACCT TATTACCATC 20577
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGGAGGAGC AGAAAATGCA ACAGCATCTA GCTCCACAGT ACAAACACCT TATTACCATC 1172
AAAGCAGGAA AGCCAAAAGG TACTCTACTT GATGCCTTAC AGAGTGACCC AGAAAAGGTT 20517
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAAGCAGGAA AGCCAAAAGG TACTCTACTT GATGCCTTAC AGAGTGACCC AGAAAAGGTT 1232
AGAAGGCTCA GTTTGAGCGA GCAACAACTT GCCAAATTGG CAGATCATCA TGGTACCGAA 20457
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGAAGGCTCA GTTTGAGCGA GCAACAACTT GCCAAATTGG CAGATCATCA TGGTACCGAA 1292
ATTGTAAGGT ACGAATCTGC TAAGTGAATG AAGTTGCTCT TCCTTTCCAT CTTCAGCATC 20397
||||| ||
ATTGTCAG.. .......... .......... .......... .......... .......... 1300
AGTGAAAATG TTTTTTTTTT TTTGCACTTT ATAGGCCATC TCTCGCTAAC TCTGCTGAAA 20337
.......... .......... .......... .......... .......... .......... 1300
TGCCCAATCT TTTTGGCCAA AACAGGTTCA CACAGAGAAA CCTACTGAGG ATATACCCAA 20277
||||| |||||||||| |||||||||| ||||||||||
.......... .......... .....GTTCA CACAGAGAAA CCTACTGAGG ATATACCCAA 1335
AGGGCACTCG GGTCACATCA TCCAACTATA ATCCATTTCT TGGTTGGGTG CATGGTGCTC 20217
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGGCACTCG GGTCACATCA TCCAACTATA ATCCATTTCT TGGTTGGGTG CATGGTGCTC 1395
AGATGGTAGC GTTCAATATG CAGGTGAGGT GCACTTCTGT TCCTGAGCAG TTAGTTCCAG 20157
|||||||||| |||||||||| |||
AGATGGTAGC GTTCAATATG CAG....... .......... .......... .......... 1418
AGTGATGGTT TAGCTCTTTG TACCTTATTT CCAATTCAGT AAATTCGGTG AGGAATCAAT 20097
.......... .......... .......... .......... .......... .......... 1418
TTGCTGAATG CAGTTAAGTT TACATTTTAT CTTATAATTA TACCTGAACG ATTATTATGG 20037
.......... .......... .......... .......... .......... .......... 1418
TATAATATAA CTTCAGAATT GGTGGATCAA ATTTGAGCAA CCTGGAATTT CTGGCTCCAT 19977
.......... .......... .......... .......... .......... .......... 1418
GTTTTCTGAA TGCCTGTCAA GTTGTGACAT TTGCCGCTTC TTTTACCGTT GTCATATTAA 19917
.......... .......... .......... .......... .......... .......... 1418
AAATACATGA AATTTCTTGC AGGGATATGG AAGAGCTCTT TGGTTGATGC ATGGATTTTA 19857
|||||||| |||||||||| |||||||||| ||||||||||
.......... .......... ..GGATATGG AAGAGCTCTT TGGTTGATGC ATGGATTTTA 1456
TAAAGCTAAT GGTGGCTGTG GTTATGTGAA GAAACCAGAT TTCTTAATGC AAACTGATCC 19797
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TAAAGCTAAT GGTGGCTGTG GTTATGTGAA GAAACCAGAT TTCTTAATGC AAACTGATCC 1516
AGAGGTTTTT GACCCAAAAA AATCCCTATC TCCCAAGAAA ACCTTGAAGG TATGCATGCC 19737
|||||||||| |||||||||| |||||||||| | |||||||| |||||||||
AGAGGTTTTT GACCCAAAAA AATCCCTATC TTCCAAGAAA ACCTTGAAG. .......... 1565
TGTCATTCTT TTTGTTTGTG CTCGTCTGTG AAACCTGGAG ACTTCACTGA AGTGCTGCCT 19677
.......... .......... .......... .......... .......... .......... 1565
TTCAGGTGAA AGTATACATG GGGGATGGTT GGCGGATGGA CTTCACGCAG ACCCACTTTG 19617
||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.....GTGAA AGTATACATG GGGGATGGTT GGCGGATGGA CTTCACGCAG ACCCACTTTG 1620
ATCAATATTC TCCTCCAGAC TTTTATGCAC GGGTACGTAC GTGGATTGAA TTTCATACCG 19557
|||||||||| |||||||||| |||||||||| ||
ATCAATATTC TCCTCCAGAC TTTTATGCAC GG........ .......... .......... 1652
AAAACGGTTC GCTACTCCAA GTTGATGTGA TATTATGGAG GTGACGATGG AAAATGGACT 19497
.......... .......... .......... .......... .......... .......... 1652
TGTGATGGGA TGATGGATAG GTGGGGATAG CGGGAGTACC AGCGGACTCG GTGATGAAGA 19437
|||||||||| |||||||||| |||||||||| ||||||||||
.......... .......... GTGGGGATAG CGGGAGTACC AGCGGACTCG GTGATGAAGA 1692
GAACGAGGGC GATAGAGGAT AACTGGGTGC CGGTGTGGGA GGAGGATTTC ACCTTCAAAC 19377
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAACGAGGGC GATAGAGGAT AACTGGGTGC CGGTGTGGGA GGAGGATTTC ACCTTCAAAC 1752
TGACCGTGCC GGAGATCGCG TTGCTGCGGG TGGAGGTGCA CGAGTACGAC ATGTCGGAGA 19317
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGACCGTGCC GGAGATCGCG TTGCTGCGGG TGGAGGTGCA CGAGTACGAC ATGTCGGAGA 1812
AGGACGACTT CGGCGGCCAG ACGGTGCTGC CGGTGTCGGA TCTCATCCCG GGGATCCGAG 19257
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||||
AGGACGACTT CGGCGGCCAG ACGGTGCTGC CGGTGTCGGA GCTCATCCCG GGGATCCGAG 1872
CGGTGGCACT CCACGACCGC AAAGGGATCA AGTTGAACAA CGTCAAGCTT CTCATGCGCT 19197
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGTGGCACT CCACGACCGC AAAGGGATCA AGTTGAACAA CGTCAAGCTT CTCATGCGCT 1932
TCGAGTTTGA ATGACCCAAC ACACCGACAC TTTCTTTCTT TCTCGCCGCA TCGCATTGCA 19137
|||||||||| |||||||||| ||||||||| ||||||| |||||||||| | ||||||||
TCGAGTTTGA ATGACCCAAC ACACCGACA- ---CTTTCTT TCTCGCCGCA TTGCATTGCA 1988
CTGTGCCTGT GCTTGTGCAG CATCCATCAT TTGGTTTGGT TTTTCATGTT CCTGTGCATA 19077
|||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGTGCCTGT GCCTGTGCAG CATCCATCAT TTGGTTTGGT TTTTCATGTT CCTGTGCATA 2048
CGCATTTGTG TCTGTACATA GGCTCGGTCC TGTATATTGT TTGTGAGTAA CATGTAATAA 19017
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ||
CGCATTTGTG TCTGTACATA GGCTCGGTCC TGTATATTGT TTGTGAGTAA CATGTAACAA 2108
TAAGGCTTCA CGCCATGTTC ATTCCTCCTG TTTGAACCCC TCCAAATATA TTAATACCGA 18957
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TAAGGCTTCA CGCCATGTTC ATTCCTCCTG TTTGAACCCC TCCAAATATA TTAATACCGA 2168
AGGTACAAAA TATCTCAACG 18937
|||||||||| ||||||||||
AGGTACAAAA TATCTCAACG 2188
hqPGS_AP005199-_12698877+ (21893 21091,21028 20783,20687 20449,20311 20194,19894 19748,19671 19585,19476 18937)
<A NAME="PGS2@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 2 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29680390" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29680390-</A>)
1 CAGATGGTAG CGTTCAATAT GCAGGGATAT GGAAGAGCTC TTTGGTTGAT GCATGGATTT
61 TATAAAGCTA ATGGTGGCTG TGGTTATGTG AAGAAACCAG ATTTCTTAAT GCAAACTGAT
121 CCAGAGGTTT TTGACCCAAA AAAATCCCTA TCTCCCAAGA AAACCTTGAA GGTGAAAGTA
181 TACATGGGGG ATGGTTGGCG GATGGACTTC ACGCAGACCC ACTTTGATCA ATATTCTCCT
241 CCAGACTTTT ATGCACGGGT GGGGATAGCG GGAGTACCAG CGGACTCGGT GATGAAGAGA
301 ACGAGGGCGA TAGAGGATAA CTGGGTGCCG GTGTGGGAGG AGGATTTCAC CTTCAAACTG
361 ACCGTGCCGG AGATCGCGTT GCTGCGGGTG GAGGTGCACG AGTACGACAT GTCGGAGAAG
421 GACGACTTCG GCGGCCAGAC GGTGCTGCCG GTGTCGGATC TCATCCCGGG GATCCGAGCG
481 GTGGCACTCC ACGACCGCAA AGGGATCAAG TTGAACAACG TCAAGCTTCT CATGCGCTTC
541 GAGTTTGAAT GACCCAACAC ACCGACACTT TCTTTCTTTC TCGCCGCATC GCATTGCACT
601 GTGCCTGTGC TTGTGCAGCA TCCATCATTT GGTTTGGTTT TTCATGTTCC TGTGCATACG
661 CATTTGTGTC TGTACATAGG CTCGGTCCTG TATATTGTTT GTGAGTAACA TGTAATAATA
721 AGGCTTCACG CCATGTTCAT TCCTCCTGTT TGAACCCCTC CAAATATATT AATACCGAAG
781 GTACAAAATA TCTCAAAAAA AAAG
Predicted gene structure (within gDNA segment 20522 to 18599):
Exon 1 20217 20194 ( 24 n); cDNA 1 24 ( 24 n); score: 1.000
Intron 1 20193 19895 ( 299 n); Pd: 0.842 (s: 0), Pa: 0.981 (s: 1.00)
Exon 2 19894 19748 ( 147 n); cDNA 25 171 ( 147 n); score: 1.000
Intron 2 19747 19672 ( 76 n); Pd: 0.993 (s: 1.00), Pa: 0.371 (s: 1.00)
Exon 3 19671 19585 ( 87 n); cDNA 172 258 ( 87 n); score: 1.000
Intron 3 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 1.00)
Exon 4 19476 18939 ( 538 n); cDNA 259 796 ( 538 n); score: 1.000
MATCH AP005199- 29680390- 1.000 796 0.990 C
PGS_AP005199-_29680390- (20217 20194,19894 19748,19671 19585,19476 18939)
Alignment (genomic DNA sequence = upper lines):
CAGATGGTAG CGTTCAATAT GCAGGTGAGG TGCACTTCTG TTCCTGAGCA GTTAGTTCCA 20158
|||||||||| |||||||||| ||||
CAGATGGTAG CGTTCAATAT GCAG...... .......... .......... .......... 24
GAGTGATGGT TTAGCTCTTT GTACCTTATT TCCAATTCAG TAAATTCGGT GAGGAATCAA 20098
.......... .......... .......... .......... .......... .......... 24
TTTGCTGAAT GCAGTTAAGT TTACATTTTA TCTTATAATT ATACCTGAAC GATTATTATG 20038
.......... .......... .......... .......... .......... .......... 24
GTATAATATA ACTTCAGAAT TGGTGGATCA AATTTGAGCA ACCTGGAATT TCTGGCTCCA 19978
.......... .......... .......... .......... .......... .......... 24
TGTTTTCTGA ATGCCTGTCA AGTTGTGACA TTTGCCGCTT CTTTTACCGT TGTCATATTA 19918
.......... .......... .......... .......... .......... .......... 24
AAAATACATG AAATTTCTTG CAGGGATATG GAAGAGCTCT TTGGTTGATG CATGGATTTT 19858
||||||| |||||||||| |||||||||| ||||||||||
.......... .......... ...GGATATG GAAGAGCTCT TTGGTTGATG CATGGATTTT 61
ATAAAGCTAA TGGTGGCTGT GGTTATGTGA AGAAACCAGA TTTCTTAATG CAAACTGATC 19798
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATAAAGCTAA TGGTGGCTGT GGTTATGTGA AGAAACCAGA TTTCTTAATG CAAACTGATC 121
CAGAGGTTTT TGACCCAAAA AAATCCCTAT CTCCCAAGAA AACCTTGAAG GTATGCATGC 19738
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CAGAGGTTTT TGACCCAAAA AAATCCCTAT CTCCCAAGAA AACCTTGAAG .......... 171
CTGTCATTCT TTTTGTTTGT GCTCGTCTGT GAAACCTGGA GACTTCACTG AAGTGCTGCC 19678
.......... .......... .......... .......... .......... .......... 171
TTTCAGGTGA AAGTATACAT GGGGGATGGT TGGCGGATGG ACTTCACGCA GACCCACTTT 19618
|||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
......GTGA AAGTATACAT GGGGGATGGT TGGCGGATGG ACTTCACGCA GACCCACTTT 225
GATCAATATT CTCCTCCAGA CTTTTATGCA CGGGTACGTA CGTGGATTGA ATTTCATACC 19558
|||||||||| |||||||||| |||||||||| |||
GATCAATATT CTCCTCCAGA CTTTTATGCA CGG....... .......... .......... 258
GAAAACGGTT CGCTACTCCA AGTTGATGTG ATATTATGGA GGTGACGATG GAAAATGGAC 19498
.......... .......... .......... .......... .......... .......... 258
TTGTGATGGG ATGATGGATA GGTGGGGATA GCGGGAGTAC CAGCGGACTC GGTGATGAAG 19438
||||||||| |||||||||| |||||||||| ||||||||||
.......... .......... .GTGGGGATA GCGGGAGTAC CAGCGGACTC GGTGATGAAG 297
AGAACGAGGG CGATAGAGGA TAACTGGGTG CCGGTGTGGG AGGAGGATTT CACCTTCAAA 19378
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGAACGAGGG CGATAGAGGA TAACTGGGTG CCGGTGTGGG AGGAGGATTT CACCTTCAAA 357
CTGACCGTGC CGGAGATCGC GTTGCTGCGG GTGGAGGTGC ACGAGTACGA CATGTCGGAG 19318
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGACCGTGC CGGAGATCGC GTTGCTGCGG GTGGAGGTGC ACGAGTACGA CATGTCGGAG 417
AAGGACGACT TCGGCGGCCA GACGGTGCTG CCGGTGTCGG ATCTCATCCC GGGGATCCGA 19258
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAGGACGACT TCGGCGGCCA GACGGTGCTG CCGGTGTCGG ATCTCATCCC GGGGATCCGA 477
GCGGTGGCAC TCCACGACCG CAAAGGGATC AAGTTGAACA ACGTCAAGCT TCTCATGCGC 19198
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCGGTGGCAC TCCACGACCG CAAAGGGATC AAGTTGAACA ACGTCAAGCT TCTCATGCGC 537
TTCGAGTTTG AATGACCCAA CACACCGACA CTTTCTTTCT TTCTCGCCGC ATCGCATTGC 19138
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCGAGTTTG AATGACCCAA CACACCGACA CTTTCTTTCT TTCTCGCCGC ATCGCATTGC 597
ACTGTGCCTG TGCTTGTGCA GCATCCATCA TTTGGTTTGG TTTTTCATGT TCCTGTGCAT 19078
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTGTGCCTG TGCTTGTGCA GCATCCATCA TTTGGTTTGG TTTTTCATGT TCCTGTGCAT 657
ACGCATTTGT GTCTGTACAT AGGCTCGGTC CTGTATATTG TTTGTGAGTA ACATGTAATA 19018
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACGCATTTGT GTCTGTACAT AGGCTCGGTC CTGTATATTG TTTGTGAGTA ACATGTAATA 717
ATAAGGCTTC ACGCCATGTT CATTCCTCCT GTTTGAACCC CTCCAAATAT ATTAATACCG 18958
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATAAGGCTTC ACGCCATGTT CATTCCTCCT GTTTGAACCC CTCCAAATAT ATTAATACCG 777
AAGGTACAAA ATATCTCAA 18939
|||||||||| |||||||||
AAGGTACAAA ATATCTCAA 796
hqPGS_AP005199-_29680390- (20217 20194,19894 19748,19671 19585,19476 18939)
<A NAME="PGS10@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 10 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=32971490" TARGET="NUCLEOTIDE SEQUENCE SEARCH">32971490+</A>)
1 CACCGATGAA GACGAAGATG ACGAGGAGGA GGAGCAGAAA ATGCAACAGC ATCTAGCTCC
61 ACAGTACAAA CACCTTATTA CCATCAAAGC AGGAAAGCCA AAAGGTACTC TACTTGATGC
121 CTTACAGAGT GACCCAGAAA AGGTTAGAAG GCTCAGTTTG AGCGAGCAAC AACTTGCCAA
181 ATTGGCAGAT CATCATGGTA CCGAAATTGT AAGGTTCACA CAGAGAAACC TACTGAGGAT
241 ATACCCAAAG GGCACTCGGG TCACATCATC CAACTATAAT CCATTTCTTG GTTGGGTGCA
301 TGGTGCTCAG ATGGTAGCGT TCAATATGCA GGGATATGGA AGAGCTCTTT GGTTGATGCA
361 TGGATTTTAT AAAGCTAATG GTGGCTGTGG TTATGTGAAG AAACCAGATT TCTTAATGCA
421 AACTGATCCA GAGGTTTTTG ACCCAAAAAA AATCCCTATC TCCCAAGAAA ACCTTGAAGG
481 TGAAAGTATA CATGGGGGAT GGTTGGCGGA TGGACTTCAC GCAGACCCAC TTTGATCAAT
541 ATTCTCCTCC AGACTTTTAT GCACGGGTGG GGATAGCGGG AGTACCAGCG GACTCGGTGA
601 TGAAGAGAAC GAGGGCGATA GAGGATAACT GGGTGCCGGT GTGGGAGGAG GATTTCACCT
661 TCAAACTGAC CGTGCCGGAG ATCGCGTTGC TGCGGGTGGA GGTGCACGAG TACGACATGT
721 CGGAGAAGGA CGACTTCGGC GGCCAGACGG TGCTGCCGGT GTCGGATCTC ATCCCGGGGA
781 TCCGAGCGGT GGCACTCCAC GACCGCAAAG GGATCAAGTT GAACAACGTC AAGCTTCTCA
841 TGCGCTTCGA GTTTGAATGA CCCAACACAC CGACACTTTC TTTCTTTCTC GCCGCATCGC
901 ATTGCACTGT GCCTGTGCTT GTGCAGCATC CATCATTTGG TTTGGTTTTT CATGTTCCTG
961 TGCATACGCA TTTGTGTCTG TACATAGGCT CGGTCCTGTA TATTGTTTGT GAGTAACATG
1021 TAATAATAAG GCTTCACGCC ATGTTCATTC CTCCTGTTTG AACCCCTCCA AATATATTAA
1081 TACCGAAGGT ACAAAATATC TC
Predicted gene structure (within gDNA segment 20961 to 18636):
Exon 1 20661 20449 ( 213 n); cDNA 1 213 ( 213 n); score: 1.000
Intron 1 20448 20312 ( 137 n); Pd: 0.817 (s: 1.00), Pa: 0.859 (s: 1.00)
Exon 2 20311 20194 ( 118 n); cDNA 214 331 ( 118 n); score: 1.000
Intron 2 20193 19895 ( 299 n); Pd: 0.842 (s: 1.00), Pa: 0.981 (s: 1.00)
Exon 3 19894 19748 ( 147 n); cDNA 332 479 ( 148 n); score: 0.986
Intron 3 19747 19672 ( 76 n); Pd: 0.993 (s: 0.96), Pa: 0.371 (s: 1.00)
Exon 4 19671 19585 ( 87 n); cDNA 480 566 ( 87 n); score: 1.000
Intron 4 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 1.00)
Exon 5 19476 18941 ( 536 n); cDNA 567 1102 ( 536 n); score: 1.000
MATCH AP005199- 32971490+ 0.998 1101 0.999 C
PGS_AP005199-_32971490+ (20661 20449,20311 20194,19894 19748,19671 19585,19476 18941)
Alignment (genomic DNA sequence = upper lines):
CACCGATGAA GACGAAGATG ACGAGGAGGA GGAGCAGAAA ATGCAACAGC ATCTAGCTCC 20602
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CACCGATGAA GACGAAGATG ACGAGGAGGA GGAGCAGAAA ATGCAACAGC ATCTAGCTCC 60
ACAGTACAAA CACCTTATTA CCATCAAAGC AGGAAAGCCA AAAGGTACTC TACTTGATGC 20542
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACAGTACAAA CACCTTATTA CCATCAAAGC AGGAAAGCCA AAAGGTACTC TACTTGATGC 120
CTTACAGAGT GACCCAGAAA AGGTTAGAAG GCTCAGTTTG AGCGAGCAAC AACTTGCCAA 20482
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTACAGAGT GACCCAGAAA AGGTTAGAAG GCTCAGTTTG AGCGAGCAAC AACTTGCCAA 180
ATTGGCAGAT CATCATGGTA CCGAAATTGT AAGGTACGAA TCTGCTAAGT GAATGAAGTT 20422
|||||||||| |||||||||| |||||||||| |||
ATTGGCAGAT CATCATGGTA CCGAAATTGT AAG....... .......... .......... 213
GCTCTTCCTT TCCATCTTCA GCATCAGTGA AAATGTTTTT TTTTTTTTGC ACTTTATAGG 20362
.......... .......... .......... .......... .......... .......... 213
CCATCTCTCG CTAACTCTGC TGAAATGCCC AATCTTTTTG GCCAAAACAG GTTCACACAG 20302
||||||||||
.......... .......... .......... .......... .......... GTTCACACAG 223
AGAAACCTAC TGAGGATATA CCCAAAGGGC ACTCGGGTCA CATCATCCAA CTATAATCCA 20242
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGAAACCTAC TGAGGATATA CCCAAAGGGC ACTCGGGTCA CATCATCCAA CTATAATCCA 283
TTTCTTGGTT GGGTGCATGG TGCTCAGATG GTAGCGTTCA ATATGCAGGT GAGGTGCACT 20182
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||
TTTCTTGGTT GGGTGCATGG TGCTCAGATG GTAGCGTTCA ATATGCAG.. .......... 331
TCTGTTCCTG AGCAGTTAGT TCCAGAGTGA TGGTTTAGCT CTTTGTACCT TATTTCCAAT 20122
.......... .......... .......... .......... .......... .......... 331
TCAGTAAATT CGGTGAGGAA TCAATTTGCT GAATGCAGTT AAGTTTACAT TTTATCTTAT 20062
.......... .......... .......... .......... .......... .......... 331
AATTATACCT GAACGATTAT TATGGTATAA TATAACTTCA GAATTGGTGG ATCAAATTTG 20002
.......... .......... .......... .......... .......... .......... 331
AGCAACCTGG AATTTCTGGC TCCATGTTTT CTGAATGCCT GTCAAGTTGT GACATTTGCC 19942
.......... .......... .......... .......... .......... .......... 331
GCTTCTTTTA CCGTTGTCAT ATTAAAAATA CATGAAATTT CTTGCAGGGA TATGGAAGAG 19882
||| ||||||||||
.......... .......... .......... .......... .......GGA TATGGAAGAG 344
CTCTTTGGTT GATGCATGGA TTTTATAAAG CTAATGGTGG CTGTGGTTAT GTGAAGAAAC 19822
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCTTTGGTT GATGCATGGA TTTTATAAAG CTAATGGTGG CTGTGGTTAT GTGAAGAAAC 404
CAGATTTCTT AATGCAAACT GATCCAGAGG TTTTTGACCC -AAAAAAATC CCTATCTCCC 19763
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||||
CAGATTTCTT AATGCAAACT GATCCAGAGG TTTTTGACCC AAAAAAAATC CCTATCTCCC 464
AAGAAAACCT TGAAGGTATG CATGCCTGTC ATTCTTTTTG TTTGTGCTCG TCTGTGAAAC 19703
|||||||||| |||||
AAGAAAACCT TGAAG..... .......... .......... .......... .......... 479
CTGGAGACTT CACTGAAGTG CTGCCTTTCA GGTGAAAGTA TACATGGGGG ATGGTTGGCG 19643
||||||||| |||||||||| ||||||||||
.......... .......... .......... .GTGAAAGTA TACATGGGGG ATGGTTGGCG 508
GATGGACTTC ACGCAGACCC ACTTTGATCA ATATTCTCCT CCAGACTTTT ATGCACGGGT 19583
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||
GATGGACTTC ACGCAGACCC ACTTTGATCA ATATTCTCCT CCAGACTTTT ATGCACGG.. 566
ACGTACGTGG ATTGAATTTC ATACCGAAAA CGGTTCGCTA CTCCAAGTTG ATGTGATATT 19523
.......... .......... .......... .......... .......... .......... 566
ATGGAGGTGA CGATGGAAAA TGGACTTGTG ATGGGATGAT GGATAGGTGG GGATAGCGGG 19463
|||| ||||||||||
.......... .......... .......... .......... ......GTGG GGATAGCGGG 580
AGTACCAGCG GACTCGGTGA TGAAGAGAAC GAGGGCGATA GAGGATAACT GGGTGCCGGT 19403
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGTACCAGCG GACTCGGTGA TGAAGAGAAC GAGGGCGATA GAGGATAACT GGGTGCCGGT 640
GTGGGAGGAG GATTTCACCT TCAAACTGAC CGTGCCGGAG ATCGCGTTGC TGCGGGTGGA 19343
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGGGAGGAG GATTTCACCT TCAAACTGAC CGTGCCGGAG ATCGCGTTGC TGCGGGTGGA 700
GGTGCACGAG TACGACATGT CGGAGAAGGA CGACTTCGGC GGCCAGACGG TGCTGCCGGT 19283
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTGCACGAG TACGACATGT CGGAGAAGGA CGACTTCGGC GGCCAGACGG TGCTGCCGGT 760
GTCGGATCTC ATCCCGGGGA TCCGAGCGGT GGCACTCCAC GACCGCAAAG GGATCAAGTT 19223
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTCGGATCTC ATCCCGGGGA TCCGAGCGGT GGCACTCCAC GACCGCAAAG GGATCAAGTT 820
GAACAACGTC AAGCTTCTCA TGCGCTTCGA GTTTGAATGA CCCAACACAC CGACACTTTC 19163
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAACAACGTC AAGCTTCTCA TGCGCTTCGA GTTTGAATGA CCCAACACAC CGACACTTTC 880
TTTCTTTCTC GCCGCATCGC ATTGCACTGT GCCTGTGCTT GTGCAGCATC CATCATTTGG 19103
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTCTTTCTC GCCGCATCGC ATTGCACTGT GCCTGTGCTT GTGCAGCATC CATCATTTGG 940
TTTGGTTTTT CATGTTCCTG TGCATACGCA TTTGTGTCTG TACATAGGCT CGGTCCTGTA 19043
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTGGTTTTT CATGTTCCTG TGCATACGCA TTTGTGTCTG TACATAGGCT CGGTCCTGTA 1000
TATTGTTTGT GAGTAACATG TAATAATAAG GCTTCACGCC ATGTTCATTC CTCCTGTTTG 18983
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TATTGTTTGT GAGTAACATG TAATAATAAG GCTTCACGCC ATGTTCATTC CTCCTGTTTG 1060
AACCCCTCCA AATATATTAA TACCGAAGGT ACAAAATATC TC 18941
|||||||||| |||||||||| |||||||||| |||||||||| ||
AACCCCTCCA AATATATTAA TACCGAAGGT ACAAAATATC TC 1102
hqPGS_AP005199-_32971490+ (20661 20449,20311 20194,19894 19748,19671 19585,19476 18941)
<A NAME="PGS12@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 12 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=22305615" TARGET="NUCLEOTIDE SEQUENCE SEARCH">22305615+</A>)
1 TTGGGGAATG TTGCCGGATG ACTTCACGCA GACCCACTTT GATCAATATT CTCCTCCAGA
61 CTTTTATGCA CGGGTGGGGA TAGCGGGAGT ACCAGCGGAC TCGGTGATGA AGAGAACGAG
121 GGCGATAGAG GATAACTGGG TGCCGGTGTG GGAGGAGGAT TTCACCTTCA AACTGACCGT
181 GCCGGAGATC GCGTTGCTGC GGGTGGAGGT GCACGAGTAC GACATGTCGG AGAAGGACGA
241 CTTCGGCGGC CAGACGGTGC TGCCGGTGTC GGAGCTCATC CCGGGGATCC GAGCGGTGGC
301 ACTCCACGAC CGCAAAGGGA TCAAGTTGAA CAACGTCAAG CTTCTCATGC GCTTCGAGTT
361 TGAATGACCC AACACACCGA CACTTTCTTT CTCGCCGCAT TGCATTGCAC TGTGCCTGTG
421 CCTGTGCAGC ATCCATCATT TGGTTTGGTT TTTCATGTTC CTGTGCATAC GCATTTGTGT
481 CTGTACATAG GCTCGGTCCT GTATATTGTT TGTGAGTAAC ATGTAACATA AGGCTTCACG
541 CCATGTTCAT TCCTCCTGTT TGAACCCCTC CAAATATATT AATACCGAAG GTACAAAAAA
601 AAAAAAAAAA AAAAAA
Predicted gene structure (within gDNA segment 20033 to 18552):
Exon 1 19656 19585 ( 72 n); cDNA 3 73 ( 71 n); score: 0.944
Intron 1 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 1.00)
Exon 2 19476 18948 ( 529 n); cDNA 74 597 ( 524 n); score: 0.983
PPA cDNA 598 616
MATCH AP005199- 22305615+ 0.978 601 0.976 C
PGS_AP005199-_22305615+ (19656 19585,19476 18948)
Alignment (genomic DNA sequence = upper lines):
GGGGATGGTT GGCGGATGGA CTTCACGCAG ACCCACTTTG ATCAATATTC TCCTCCAGAC 19597
||||| ||| | ||||| || |||||||||| |||||||||| |||||||||| ||||||||||
GGGGAATGTT GCCGGAT-GA CTTCACGCAG ACCCACTTTG ATCAATATTC TCCTCCAGAC 61
TTTTATGCAC GGGTACGTAC GTGGATTGAA TTTCATACCG AAAACGGTTC GCTACTCCAA 19537
|||||||||| ||
TTTTATGCAC GG........ .......... .......... .......... .......... 73
GTTGATGTGA TATTATGGAG GTGACGATGG AAAATGGACT TGTGATGGGA TGATGGATAG 19477
.......... .......... .......... .......... .......... .......... 73
GTGGGGATAG CGGGAGTACC AGCGGACTCG GTGATGAAGA GAACGAGGGC GATAGAGGAT 19417
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGGGGATAG CGGGAGTACC AGCGGACTCG GTGATGAAGA GAACGAGGGC GATAGAGGAT 133
AACTGGGTGC CGGTGTGGGA GGAGGATTTC ACCTTCAAAC TGACCGTGCC GGAGATCGCG 19357
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AACTGGGTGC CGGTGTGGGA GGAGGATTTC ACCTTCAAAC TGACCGTGCC GGAGATCGCG 193
TTGCTGCGGG TGGAGGTGCA CGAGTACGAC ATGTCGGAGA AGGACGACTT CGGCGGCCAG 19297
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTGCTGCGGG TGGAGGTGCA CGAGTACGAC ATGTCGGAGA AGGACGACTT CGGCGGCCAG 253
ACGGTGCTGC CGGTGTCGGA TCTCATCCCG GGGATCCGAG CGGTGGCACT CCACGACCGC 19237
|||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||||
ACGGTGCTGC CGGTGTCGGA GCTCATCCCG GGGATCCGAG CGGTGGCACT CCACGACCGC 313
AAAGGGATCA AGTTGAACAA CGTCAAGCTT CTCATGCGCT TCGAGTTTGA ATGACCCAAC 19177
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAAGGGATCA AGTTGAACAA CGTCAAGCTT CTCATGCGCT TCGAGTTTGA ATGACCCAAC 373
ACACCGACAC TTTCTTTCTT TCTCGCCGCA TCGCATTGCA CTGTGCCTGT GCTTGTGCAG 19117
||||||||| ||||||| |||||||||| | |||||||| |||||||||| || |||||||
ACACCGACA- ---CTTTCTT TCTCGCCGCA TTGCATTGCA CTGTGCCTGT GCCTGTGCAG 429
CATCCATCAT TTGGTTTGGT TTTTCATGTT CCTGTGCATA CGCATTTGTG TCTGTACATA 19057
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CATCCATCAT TTGGTTTGGT TTTTCATGTT CCTGTGCATA CGCATTTGTG TCTGTACATA 489
GGCTCGGTCC TGTATATTGT TTGTGAGTAA CATGTAATAA TAAGGCTTCA CGCCATGTTC 18997
|||||||||| |||||||||| |||||||||| ||||||| | |||||||||| ||||||||||
GGCTCGGTCC TGTATATTGT TTGTGAGTAA CATGTAA-CA TAAGGCTTCA CGCCATGTTC 548
ATTCCTCCTG TTTGAACCCC TCCAAATATA TTAATACCGA AGGTACAAA 18948
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||
ATTCCTCCTG TTTGAACCCC TCCAAATATA TTAATACCGA AGGTACAAA 597
hqPGS_AP005199-_22305615+ (19656 19585,19476 18948)
<A NAME="PGS13@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 13 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=32980476" TARGET="NUCLEOTIDE SEQUENCE SEARCH">32980476+</A>)
1 GGGAATTAAT AAAATGTAGT GACCGTGCCG ACGGAGGAAG ACGAAGACAG GAGACGGTTA
61 CTGGAGTTGA GTACTCCACC CACCACACCA CACAAGAGAG AGAAGGGTTG GGGTTGGGGT
121 CACTCTTTCC TTTTCTCTGT TGTTGTTGGC TTGATGATGA GCTGATTCGC ATAATTCCAA
181 TTCCAATTCC AATTATAATT CCAAGAGGCT TATCATCAAC TCAACTGAAG AAGAAGAAGA
241 AGAAGAAGAA GAAGAAGAGG AGGAGGGTTG TGAACTGATT TGGGAAGGGA GGGGGAGGAG
301 GAAGGCGATC GATCGGCGAT GGGCACGTAC AAGTGCTGCC TCATCTTCAA GCGCCGCTTC
361 CGCTGGAACG ACGCGCCGCC GCCCGACGAT GTCCGCGCCC TCTTCGCCAA CCACTCCGCC
421 GGCGGTGGCC CCCACATGGC CGCCGACGGC CTCCGCGCCT ACCTCCAGGC CACCGGCCAG
481 GACGGCGACG TGGACATGGA GCGGCTGGTG GAGCAGATCC GGCAGCTGCA GGGGCGCGGC
541 GGGCGCATCC CGCGGGTGGG GCGGGCACTC CCACTCCTGA CGGTGGACGA CTTCCACCGA
601 TTCCTCTTCT CCCACGAGCT GAACCCACCC ATCCGGCACG GGCAGGGGCA GGTGCACCAC
661 GACATGGCCG CCCCGCTCTC CCACTACTTC ATCTACACCG GCCACAACTC CTACCTCACC
721 GGCAACCAGC TCAGCAGCGA CTGCAGCGAC CTCCCCATCA TCAGGGCTCT CCAGAGGGGC
781 GTCCGCGTCA TCGAGCTCGA CATGTGGCCC AACTCCTCCA AGGATGACAT CAGCATCCTC
841 CATGGCAGGA CGCTCACCAC CCCGGTCTCC CTCCTCAAAT GCCTCCTCTC CATCAAGCAA
901 CACGCCTTTG AGGCCTCCCC TTACCCGGTT ATCATCACGC TCGAAGACCA CCTCACCCCC
961 GATCTCCAGG ACAAAGCAGC CAAGATGGTT CTTGAAGTTT TCGGCGACAT CCTCTACTAC
1021 CCTGACAAAG ATCACCTCAA AGAGTTCCCT TCGCCTCAAG ACCTCAAGGG CCGTGTCCTC
1081 CTCTCCACCA AGCCCCCCAG GGAGTACCTT CAAGCCAAGG ATGGTAATGC TGCCACCATC
1141 AAAGAGGACG CCAAGGCCGC CGCCACTGAC GATGCCGCAT GGGGAAAAGA AGTCCCAGAT
1201 ATTCACTCTC AAATCCACTC TGCCACTAAA CATGACCAAA GAGAAGATGA CGACGACACC
1261 GATGAAGACG AAGATGACGA GGAGGAGGAG CAGAAAATGC AACAGCATCT AGCTCCACAG
1321 TACAAACACC TTATTACCAT CAAAGCAGGA AAGCCAAAAG GTACTCTACT TGATGCCTTA
1381 CAGAGTGACC CAGAAAAGGT TAGAAGGCTC AGTTTGAGCG AGCAACAACT TGCCAAATTG
1441 GCAGATCATC ATGGTACCGA AATTGTAAGG TTCACACAGA GAAACCTACT GAGGATATAC
1501 CCAAAGGGCA CTCGGGTCAC ATCATCCAAC TATAATCCAT TTCTTGGTTG GGTGCATGGT
1561 GCTCAGATGG TAGCGTTCAA TATGCAGGGA TATGGAAGAG CTCTTTGGTT GATGCATGGA
1621 TTTTATAAAG CTAATGGTGG CTGTGGTTAT GTGAAGAAAC CAGATTTCTT AATGCAAACT
1681 GATCCAGAGG TTTTTGACCC AAAAAAATCC CTATCTCCCA AGAAAACCTT GAAGGTGAAA
1741 GTATACATGG GGGATGGTTG GCGGATGGAC TTCACGCAGA CCCACTTTGA TCAATATTCT
1801 CCTCCAGACT TTTATGCACG GGTGGGGATA GCGGGAGTAC CAGCGGACTC GGTGATGAAG
1861 AGAACGAGGG CGATAGAGGA TAACTGGGTG CCGGTGTGGG AGGAGGATTT CACCTTCAAA
1921 CTGACCGTGC CGGAGATCGC GTTGCTGCGG GTGGAGGTGC ACGAGTACGA CATGTCGGAG
1981 AAGGACGACT TCGGCGGCCA GACGGTGCTG CCGGTGTCGG ATCTCATCCC GGGGATCCGA
2041 GCGGTGGCAC TCCACGACCG CAAAGGGATC AAGTTGAACA ACGTCAAGCT TCTCATGCGC
2101 TTCGAGTTTG AATGACCCAA CACACCGACA CTTTCTTTCT TTCTCGCCGC ATCGCATTGC
2161 ACTGTGCCTG TGCTTGTGCA GCATCCATCA TTTGGTTTGG TTTTTCATGT TCCTGTGCAT
2221 ACGCATTTGT GTCTGTACAT AGGCTCGGTC CTGTATATTG TTTGTGAGTA ACATGTAATA
2281 ATAAGGCTTC ACGCCATGTT CATTCCG
Predicted gene structure (within gDNA segment 22382 to 18682):
Exon 1 22072 21091 ( 982 n); cDNA 3 984 ( 982 n); score: 1.000
Intron 1 21090 21029 ( 62 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 2 21028 20783 ( 246 n); cDNA 985 1230 ( 246 n); score: 1.000
Intron 2 20782 20688 ( 95 n); Pd: 0.994 (s: 1.00), Pa: 0.861 (s: 1.00)
Exon 3 20687 20449 ( 239 n); cDNA 1231 1469 ( 239 n); score: 1.000
Intron 3 20448 20312 ( 137 n); Pd: 0.817 (s: 1.00), Pa: 0.859 (s: 1.00)
Exon 4 20311 20194 ( 118 n); cDNA 1470 1587 ( 118 n); score: 1.000
Intron 4 20193 19895 ( 299 n); Pd: 0.842 (s: 1.00), Pa: 0.981 (s: 1.00)
Exon 5 19894 19748 ( 147 n); cDNA 1588 1734 ( 147 n); score: 1.000
Intron 5 19747 19672 ( 76 n); Pd: 0.993 (s: 1.00), Pa: 0.371 (s: 1.00)
Exon 6 19671 19585 ( 87 n); cDNA 1735 1821 ( 87 n); score: 1.000
Intron 6 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 1.00)
Exon 7 19476 18992 ( 485 n); cDNA 1822 2306 ( 485 n); score: 1.000
MATCH AP005199- 32980476+ 1.000 2304 0.999 C
PGS_AP005199-_32980476+ (22072 21091,21028 20783,20687 20449,20311 20194,19894 19748,19671 19585,19476 18992)
Alignment (genomic DNA sequence = upper lines):
GAATTAATAA AATGTAGTGA CCGTGCCGAC GGAGGAAGAC GAAGACAGGA GACGGTTACT 22013
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAATTAATAA AATGTAGTGA CCGTGCCGAC GGAGGAAGAC GAAGACAGGA GACGGTTACT 62
GGAGTTGAGT ACTCCACCCA CCACACCACA CAAGAGAGAG AAGGGTTGGG GTTGGGGTCA 21953
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGAGTTGAGT ACTCCACCCA CCACACCACA CAAGAGAGAG AAGGGTTGGG GTTGGGGTCA 122
CTCTTTCCTT TTCTCTGTTG TTGTTGGCTT GATGATGAGC TGATTCGCAT AATTCCAATT 21893
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCTTTCCTT TTCTCTGTTG TTGTTGGCTT GATGATGAGC TGATTCGCAT AATTCCAATT 182
CCAATTCCAA TTATAATTCC AAGAGGCTTA TCATCAACTC AACTGAAGAA GAAGAAGAAG 21833
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCAATTCCAA TTATAATTCC AAGAGGCTTA TCATCAACTC AACTGAAGAA GAAGAAGAAG 242
AAGAAGAAGA AGAAGAGGAG GAGGGTTGTG AACTGATTTG GGAAGGGAGG GGGAGGAGGA 21773
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAGAAGAAGA AGAAGAGGAG GAGGGTTGTG AACTGATTTG GGAAGGGAGG GGGAGGAGGA 302
AGGCGATCGA TCGGCGATGG GCACGTACAA GTGCTGCCTC ATCTTCAAGC GCCGCTTCCG 21713
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGCGATCGA TCGGCGATGG GCACGTACAA GTGCTGCCTC ATCTTCAAGC GCCGCTTCCG 362
CTGGAACGAC GCGCCGCCGC CCGACGATGT CCGCGCCCTC TTCGCCAACC ACTCCGCCGG 21653
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGGAACGAC GCGCCGCCGC CCGACGATGT CCGCGCCCTC TTCGCCAACC ACTCCGCCGG 422
CGGTGGCCCC CACATGGCCG CCGACGGCCT CCGCGCCTAC CTCCAGGCCA CCGGCCAGGA 21593
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGTGGCCCC CACATGGCCG CCGACGGCCT CCGCGCCTAC CTCCAGGCCA CCGGCCAGGA 482
CGGCGACGTG GACATGGAGC GGCTGGTGGA GCAGATCCGG CAGCTGCAGG GGCGCGGCGG 21533
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGCGACGTG GACATGGAGC GGCTGGTGGA GCAGATCCGG CAGCTGCAGG GGCGCGGCGG 542
GCGCATCCCG CGGGTGGGGC GGGCACTCCC ACTCCTGACG GTGGACGACT TCCACCGATT 21473
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCGCATCCCG CGGGTGGGGC GGGCACTCCC ACTCCTGACG GTGGACGACT TCCACCGATT 602
CCTCTTCTCC CACGAGCTGA ACCCACCCAT CCGGCACGGG CAGGGGCAGG TGCACCACGA 21413
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCTCTTCTCC CACGAGCTGA ACCCACCCAT CCGGCACGGG CAGGGGCAGG TGCACCACGA 662
CATGGCCGCC CCGCTCTCCC ACTACTTCAT CTACACCGGC CACAACTCCT ACCTCACCGG 21353
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CATGGCCGCC CCGCTCTCCC ACTACTTCAT CTACACCGGC CACAACTCCT ACCTCACCGG 722
CAACCAGCTC AGCAGCGACT GCAGCGACCT CCCCATCATC AGGGCTCTCC AGAGGGGCGT 21293
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CAACCAGCTC AGCAGCGACT GCAGCGACCT CCCCATCATC AGGGCTCTCC AGAGGGGCGT 782
CCGCGTCATC GAGCTCGACA TGTGGCCCAA CTCCTCCAAG GATGACATCA GCATCCTCCA 21233
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCGCGTCATC GAGCTCGACA TGTGGCCCAA CTCCTCCAAG GATGACATCA GCATCCTCCA 842
TGGCAGGACG CTCACCACCC CGGTCTCCCT CCTCAAATGC CTCCTCTCCA TCAAGCAACA 21173
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGGCAGGACG CTCACCACCC CGGTCTCCCT CCTCAAATGC CTCCTCTCCA TCAAGCAACA 902
CGCCTTTGAG GCCTCCCCTT ACCCGGTTAT CATCACGCTC GAAGACCACC TCACCCCCGA 21113
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGCCTTTGAG GCCTCCCCTT ACCCGGTTAT CATCACGCTC GAAGACCACC TCACCCCCGA 962
TCTCCAGGAC AAAGCAGCCA AGGTATATAT AATCTTCTTC TTCTCTCTGT CTCTGCCTTG 21053
|||||||||| |||||||||| ||
TCTCCAGGAC AAAGCAGCCA AG........ .......... .......... .......... 984
CTCGCTCACT TGCCAATGGG CCAGATGGTT CTTGAAGTTT TCGGCGACAT CCTCTACTAC 20993
|||||| |||||||||| |||||||||| ||||||||||
.......... .......... ....ATGGTT CTTGAAGTTT TCGGCGACAT CCTCTACTAC 1020
CCTGACAAAG ATCACCTCAA AGAGTTCCCT TCGCCTCAAG ACCTCAAGGG CCGTGTCCTC 20933
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCTGACAAAG ATCACCTCAA AGAGTTCCCT TCGCCTCAAG ACCTCAAGGG CCGTGTCCTC 1080
CTCTCCACCA AGCCCCCCAG GGAGTACCTT CAAGCCAAGG ATGGTAATGC TGCCACCATC 20873
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCTCCACCA AGCCCCCCAG GGAGTACCTT CAAGCCAAGG ATGGTAATGC TGCCACCATC 1140
AAAGAGGACG CCAAGGCCGC CGCCACTGAC GATGCCGCAT GGGGAAAAGA AGTCCCAGAT 20813
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAAGAGGACG CCAAGGCCGC CGCCACTGAC GATGCCGCAT GGGGAAAAGA AGTCCCAGAT 1200
ATTCACTCTC AAATCCACTC TGCCACTAAA GTACTCCTCA TATTACTAGC TTCTTCTTCT 20753
|||||||||| |||||||||| ||||||||||
ATTCACTCTC AAATCCACTC TGCCACTAAA .......... .......... .......... 1230
TCTTCTTATG CTCATAGTAG AGCCAGTTTC TTACCTGCAG GGCACACTTT TGTTTCATTC 20693
.......... .......... .......... .......... .......... .......... 1230
TGCAGCATGA CCAAAGAGAA GATGACGACG ACACCGATGA AGACGAAGAT GACGAGGAGG 20633
||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.....CATGA CCAAAGAGAA GATGACGACG ACACCGATGA AGACGAAGAT GACGAGGAGG 1285
AGGAGCAGAA AATGCAACAG CATCTAGCTC CACAGTACAA ACACCTTATT ACCATCAAAG 20573
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGAGCAGAA AATGCAACAG CATCTAGCTC CACAGTACAA ACACCTTATT ACCATCAAAG 1345
CAGGAAAGCC AAAAGGTACT CTACTTGATG CCTTACAGAG TGACCCAGAA AAGGTTAGAA 20513
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CAGGAAAGCC AAAAGGTACT CTACTTGATG CCTTACAGAG TGACCCAGAA AAGGTTAGAA 1405
GGCTCAGTTT GAGCGAGCAA CAACTTGCCA AATTGGCAGA TCATCATGGT ACCGAAATTG 20453
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGCTCAGTTT GAGCGAGCAA CAACTTGCCA AATTGGCAGA TCATCATGGT ACCGAAATTG 1465
TAAGGTACGA ATCTGCTAAG TGAATGAAGT TGCTCTTCCT TTCCATCTTC AGCATCAGTG 20393
||||
TAAG...... .......... .......... .......... .......... .......... 1469
AAAATGTTTT TTTTTTTTTG CACTTTATAG GCCATCTCTC GCTAACTCTG CTGAAATGCC 20333
.......... .......... .......... .......... .......... .......... 1469
CAATCTTTTT GGCCAAAACA GGTTCACACA GAGAAACCTA CTGAGGATAT ACCCAAAGGG 20273
||||||||| |||||||||| |||||||||| ||||||||||
.......... .......... .GTTCACACA GAGAAACCTA CTGAGGATAT ACCCAAAGGG 1508
CACTCGGGTC ACATCATCCA ACTATAATCC ATTTCTTGGT TGGGTGCATG GTGCTCAGAT 20213
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CACTCGGGTC ACATCATCCA ACTATAATCC ATTTCTTGGT TGGGTGCATG GTGCTCAGAT 1568
GGTAGCGTTC AATATGCAGG TGAGGTGCAC TTCTGTTCCT GAGCAGTTAG TTCCAGAGTG 20153
|||||||||| |||||||||
GGTAGCGTTC AATATGCAG. .......... .......... .......... .......... 1587
ATGGTTTAGC TCTTTGTACC TTATTTCCAA TTCAGTAAAT TCGGTGAGGA ATCAATTTGC 20093
.......... .......... .......... .......... .......... .......... 1587
TGAATGCAGT TAAGTTTACA TTTTATCTTA TAATTATACC TGAACGATTA TTATGGTATA 20033
.......... .......... .......... .......... .......... .......... 1587
ATATAACTTC AGAATTGGTG GATCAAATTT GAGCAACCTG GAATTTCTGG CTCCATGTTT 19973
.......... .......... .......... .......... .......... .......... 1587
TCTGAATGCC TGTCAAGTTG TGACATTTGC CGCTTCTTTT ACCGTTGTCA TATTAAAAAT 19913
.......... .......... .......... .......... .......... .......... 1587
ACATGAAATT TCTTGCAGGG ATATGGAAGA GCTCTTTGGT TGATGCATGG ATTTTATAAA 19853
|| |||||||||| |||||||||| |||||||||| ||||||||||
.......... ........GG ATATGGAAGA GCTCTTTGGT TGATGCATGG ATTTTATAAA 1629
GCTAATGGTG GCTGTGGTTA TGTGAAGAAA CCAGATTTCT TAATGCAAAC TGATCCAGAG 19793
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTAATGGTG GCTGTGGTTA TGTGAAGAAA CCAGATTTCT TAATGCAAAC TGATCCAGAG 1689
GTTTTTGACC CAAAAAAATC CCTATCTCCC AAGAAAACCT TGAAGGTATG CATGCCTGTC 19733
|||||||||| |||||||||| |||||||||| |||||||||| |||||
GTTTTTGACC CAAAAAAATC CCTATCTCCC AAGAAAACCT TGAAG..... .......... 1734
ATTCTTTTTG TTTGTGCTCG TCTGTGAAAC CTGGAGACTT CACTGAAGTG CTGCCTTTCA 19673
.......... .......... .......... .......... .......... .......... 1734
GGTGAAAGTA TACATGGGGG ATGGTTGGCG GATGGACTTC ACGCAGACCC ACTTTGATCA 19613
||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.GTGAAAGTA TACATGGGGG ATGGTTGGCG GATGGACTTC ACGCAGACCC ACTTTGATCA 1793
ATATTCTCCT CCAGACTTTT ATGCACGGGT ACGTACGTGG ATTGAATTTC ATACCGAAAA 19553
|||||||||| |||||||||| ||||||||
ATATTCTCCT CCAGACTTTT ATGCACGG.. .......... .......... .......... 1821
CGGTTCGCTA CTCCAAGTTG ATGTGATATT ATGGAGGTGA CGATGGAAAA TGGACTTGTG 19493
.......... .......... .......... .......... .......... .......... 1821
ATGGGATGAT GGATAGGTGG GGATAGCGGG AGTACCAGCG GACTCGGTGA TGAAGAGAAC 19433
|||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... ......GTGG GGATAGCGGG AGTACCAGCG GACTCGGTGA TGAAGAGAAC 1865
GAGGGCGATA GAGGATAACT GGGTGCCGGT GTGGGAGGAG GATTTCACCT TCAAACTGAC 19373
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAGGGCGATA GAGGATAACT GGGTGCCGGT GTGGGAGGAG GATTTCACCT TCAAACTGAC 1925
CGTGCCGGAG ATCGCGTTGC TGCGGGTGGA GGTGCACGAG TACGACATGT CGGAGAAGGA 19313
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGTGCCGGAG ATCGCGTTGC TGCGGGTGGA GGTGCACGAG TACGACATGT CGGAGAAGGA 1985
CGACTTCGGC GGCCAGACGG TGCTGCCGGT GTCGGATCTC ATCCCGGGGA TCCGAGCGGT 19253
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGACTTCGGC GGCCAGACGG TGCTGCCGGT GTCGGATCTC ATCCCGGGGA TCCGAGCGGT 2045
GGCACTCCAC GACCGCAAAG GGATCAAGTT GAACAACGTC AAGCTTCTCA TGCGCTTCGA 19193
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGCACTCCAC GACCGCAAAG GGATCAAGTT GAACAACGTC AAGCTTCTCA TGCGCTTCGA 2105
GTTTGAATGA CCCAACACAC CGACACTTTC TTTCTTTCTC GCCGCATCGC ATTGCACTGT 19133
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTTGAATGA CCCAACACAC CGACACTTTC TTTCTTTCTC GCCGCATCGC ATTGCACTGT 2165
GCCTGTGCTT GTGCAGCATC CATCATTTGG TTTGGTTTTT CATGTTCCTG TGCATACGCA 19073
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCCTGTGCTT GTGCAGCATC CATCATTTGG TTTGGTTTTT CATGTTCCTG TGCATACGCA 2225
TTTGTGTCTG TACATAGGCT CGGTCCTGTA TATTGTTTGT GAGTAACATG TAATAATAAG 19013
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTGTGTCTG TACATAGGCT CGGTCCTGTA TATTGTTTGT GAGTAACATG TAATAATAAG 2285
GCTTCACGCC ATGTTCATTC C 18992
|||||||||| |||||||||| |
GCTTCACGCC ATGTTCATTC C 2306
hqPGS_AP005199-_32980476+ (22072 21091,21028 20783,20687 20449,20311 20194,19894 19748,19671 19585,19476 18992)
<A NAME="PGS3@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 3 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29663931" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29663931-</A>)
1 CAGATGGTAG CGTTCAATAT GCAGGGATAT GGAAGAGCTC TTTGGTTGAT GCATGGATTT
61 TATAAAGCTA ATGGTGGCTG TGGTTATGTG AAGAAACCAG ATTTCTTAAT GCAAACTGAT
121 CCAGAGGTTT TTGACCCAAA AAAATCCCTA TCTCCCAAGA AAACCTTGAA GGTGAAAGTA
181 TACATGGGGG ATGGTTGGCG GATGGACTTC ACGCAGACCC ACTTTGATCA ATATTCTCCT
241 CCAGACTTTT ATGCACGGGT GGGGATAGCG GGAGTACCAG CGGACTCGGT GATGAAGAGA
301 ACGAGGGCGA TAGAGGATAA CTGGGTGCCG GTGTGGGAGG AGGATTTCAC CTTCAAACTG
361 ACCGTGCCGG AGATCGCGTT GCTGCGGGTG GAGGTGCACG AGTACGACAT GTCGGAGAAG
421 GACGACTTCG GCGGCCAGAC GGTGCTGCCG GTGTCGGATC TCATCCCGGG GATCCGAGCG
481 GTGGCACTCC ACGACCGCAA AGGGATCAAG TTGAACAACG TCAAGCTTTT CATGCGCTTC
541 GAGTTTGAAT GACCCAACAC ACCGACACTT TCTTTCTTTC TCGCCGCATC GCATTGCACT
601 GTGCCTGTGC TTGTGCAGCA TCCATCATTT GGTTTGGTTT TTCATGTTCC TGTGCATACG
661 CATTTGTGTC TGTACATAGG CTCGGTCCTG TATATTGTTT GTGAGTAACA TGTGATAATA
721 AGGCTTCACG CCATGTTCAT TCC
Predicted gene structure (within gDNA segment 20522 to 18692):
Exon 1 20217 20194 ( 24 n); cDNA 1 24 ( 24 n); score: 1.000
Intron 1 20193 19895 ( 299 n); Pd: 0.842 (s: 0), Pa: 0.981 (s: 1.00)
Exon 2 19894 19748 ( 147 n); cDNA 25 171 ( 147 n); score: 1.000
Intron 2 19747 19672 ( 76 n); Pd: 0.993 (s: 1.00), Pa: 0.371 (s: 1.00)
Exon 3 19671 19585 ( 87 n); cDNA 172 258 ( 87 n); score: 1.000
Intron 3 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 1.00)
Exon 4 19476 18992 ( 485 n); cDNA 259 743 ( 485 n); score: 0.996
MATCH AP005199- 29663931- 0.997 743 1.000 C
PGS_AP005199-_29663931- (20217 20194,19894 19748,19671 19585,19476 18992)
Alignment (genomic DNA sequence = upper lines):
CAGATGGTAG CGTTCAATAT GCAGGTGAGG TGCACTTCTG TTCCTGAGCA GTTAGTTCCA 20158
|||||||||| |||||||||| ||||
CAGATGGTAG CGTTCAATAT GCAG...... .......... .......... .......... 24
GAGTGATGGT TTAGCTCTTT GTACCTTATT TCCAATTCAG TAAATTCGGT GAGGAATCAA 20098
.......... .......... .......... .......... .......... .......... 24
TTTGCTGAAT GCAGTTAAGT TTACATTTTA TCTTATAATT ATACCTGAAC GATTATTATG 20038
.......... .......... .......... .......... .......... .......... 24
GTATAATATA ACTTCAGAAT TGGTGGATCA AATTTGAGCA ACCTGGAATT TCTGGCTCCA 19978
.......... .......... .......... .......... .......... .......... 24
TGTTTTCTGA ATGCCTGTCA AGTTGTGACA TTTGCCGCTT CTTTTACCGT TGTCATATTA 19918
.......... .......... .......... .......... .......... .......... 24
AAAATACATG AAATTTCTTG CAGGGATATG GAAGAGCTCT TTGGTTGATG CATGGATTTT 19858
||||||| |||||||||| |||||||||| ||||||||||
.......... .......... ...GGATATG GAAGAGCTCT TTGGTTGATG CATGGATTTT 61
ATAAAGCTAA TGGTGGCTGT GGTTATGTGA AGAAACCAGA TTTCTTAATG CAAACTGATC 19798
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATAAAGCTAA TGGTGGCTGT GGTTATGTGA AGAAACCAGA TTTCTTAATG CAAACTGATC 121
CAGAGGTTTT TGACCCAAAA AAATCCCTAT CTCCCAAGAA AACCTTGAAG GTATGCATGC 19738
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CAGAGGTTTT TGACCCAAAA AAATCCCTAT CTCCCAAGAA AACCTTGAAG .......... 171
CTGTCATTCT TTTTGTTTGT GCTCGTCTGT GAAACCTGGA GACTTCACTG AAGTGCTGCC 19678
.......... .......... .......... .......... .......... .......... 171
TTTCAGGTGA AAGTATACAT GGGGGATGGT TGGCGGATGG ACTTCACGCA GACCCACTTT 19618
|||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
......GTGA AAGTATACAT GGGGGATGGT TGGCGGATGG ACTTCACGCA GACCCACTTT 225
GATCAATATT CTCCTCCAGA CTTTTATGCA CGGGTACGTA CGTGGATTGA ATTTCATACC 19558
|||||||||| |||||||||| |||||||||| |||
GATCAATATT CTCCTCCAGA CTTTTATGCA CGG....... .......... .......... 258
GAAAACGGTT CGCTACTCCA AGTTGATGTG ATATTATGGA GGTGACGATG GAAAATGGAC 19498
.......... .......... .......... .......... .......... .......... 258
TTGTGATGGG ATGATGGATA GGTGGGGATA GCGGGAGTAC CAGCGGACTC GGTGATGAAG 19438
||||||||| |||||||||| |||||||||| ||||||||||
.......... .......... .GTGGGGATA GCGGGAGTAC CAGCGGACTC GGTGATGAAG 297
AGAACGAGGG CGATAGAGGA TAACTGGGTG CCGGTGTGGG AGGAGGATTT CACCTTCAAA 19378
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGAACGAGGG CGATAGAGGA TAACTGGGTG CCGGTGTGGG AGGAGGATTT CACCTTCAAA 357
CTGACCGTGC CGGAGATCGC GTTGCTGCGG GTGGAGGTGC ACGAGTACGA CATGTCGGAG 19318
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGACCGTGC CGGAGATCGC GTTGCTGCGG GTGGAGGTGC ACGAGTACGA CATGTCGGAG 417
AAGGACGACT TCGGCGGCCA GACGGTGCTG CCGGTGTCGG ATCTCATCCC GGGGATCCGA 19258
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAGGACGACT TCGGCGGCCA GACGGTGCTG CCGGTGTCGG ATCTCATCCC GGGGATCCGA 477
GCGGTGGCAC TCCACGACCG CAAAGGGATC AAGTTGAACA ACGTCAAGCT TCTCATGCGC 19198
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||||||||
GCGGTGGCAC TCCACGACCG CAAAGGGATC AAGTTGAACA ACGTCAAGCT TTTCATGCGC 537
TTCGAGTTTG AATGACCCAA CACACCGACA CTTTCTTTCT TTCTCGCCGC ATCGCATTGC 19138
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCGAGTTTG AATGACCCAA CACACCGACA CTTTCTTTCT TTCTCGCCGC ATCGCATTGC 597
ACTGTGCCTG TGCTTGTGCA GCATCCATCA TTTGGTTTGG TTTTTCATGT TCCTGTGCAT 19078
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACTGTGCCTG TGCTTGTGCA GCATCCATCA TTTGGTTTGG TTTTTCATGT TCCTGTGCAT 657
ACGCATTTGT GTCTGTACAT AGGCTCGGTC CTGTATATTG TTTGTGAGTA ACATGTAATA 19018
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| |||
ACGCATTTGT GTCTGTACAT AGGCTCGGTC CTGTATATTG TTTGTGAGTA ACATGTGATA 717
ATAAGGCTTC ACGCCATGTT CATTCC 18992
|||||||||| |||||||||| ||||||
ATAAGGCTTC ACGCCATGTT CATTCC 743
hqPGS_AP005199-_29663931- (20217 20194,19894 19748,19671 19585,19476 18992)
<A NAME="PGS7@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 7 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29656473" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29656473-</A>)
1 CATCATCCAA CTATAATCCA TTTCTTGGTT GGGTGCATGG TGCTCAGATG GTAGCGTTCA
61 ATATGCAGGG ATATGGAAGA GCTCTTTGGT TGATGCATGG ATTTTATAAA GCTAATGGTG
121 GCTGTGGTTA TGTGAAGAAA CCAGATTTCT TAATGCAAAC TGATCCAGAG GTTTTTGACC
181 CAAAAAAATC CCTATCTCCC AAGAAAACCT TGAAGGTGAA AGTATACATG GGGGATGGTT
241 GGCGGATGGA CTTCACGCAG ACCCACTTTG ATCAATATTC TCCTCCAGAC TTTTATGCAC
301 GGGTGGGGAT AGCGGGAGTA CCAGCGGACT CGGTGATGAA GAGAACGAGG GCGATAGAGG
361 ATAACTGGGT GCCGGTGTGG GAGGAGGATT TCACCTTCAA ACTGACCGTG CCGGAGATCG
421 CGTTGCTGCG GGTGGAGGTG CACGAGTACG ACATGTCGGA GAAGGACGAC TTCGGCGGCC
481 AGACGGTGCT GCCGGTGTCG GATCTCATCC CGGGGATCCG AGCGGTGGCA CTCCACGACC
541 GCAAAGGGAT CAAGTTGAAC AACGTCAAGC TTTTCATGCG CTTCGAGTTT GAATGACCCA
601 ACACACCGAC ACTTTCTTTC TTTCTCGCCG CATCGCATTG CACTGTGCCT GTGCTTGTGC
661 AGCATCCATC ATTTGGTTTG GTTTTTCATG TTCCTGTGCA TACGCATTTG TGTCTGTACA
721 TAGGCTCGGT CCTGTATATT GTTTGTGAGG GGCATGTAAT AATAAGGCTT CACGCCATGT
781 TCAAATAAAA AAG
Predicted gene structure (within gDNA segment 20566 to 18646):
Exon 1 20261 20194 ( 68 n); cDNA 1 68 ( 68 n); score: 1.000
Intron 1 20193 19895 ( 299 n); Pd: 0.842 (s: 1.00), Pa: 0.981 (s: 1.00)
Exon 2 19894 19748 ( 147 n); cDNA 69 215 ( 147 n); score: 1.000
Intron 2 19747 19672 ( 76 n); Pd: 0.993 (s: 1.00), Pa: 0.371 (s: 1.00)
Exon 3 19671 19585 ( 87 n); cDNA 216 302 ( 87 n); score: 1.000
Intron 3 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 1.00)
Exon 4 19476 18997 ( 480 n); cDNA 303 782 ( 480 n); score: 0.992
MATCH AP005199- 29656473- 0.995 782 0.986 C
PGS_AP005199-_29656473- (20261 20194,19894 19748,19671 19585,19476 18997)
Alignment (genomic DNA sequence = upper lines):
CATCATCCAA CTATAATCCA TTTCTTGGTT GGGTGCATGG TGCTCAGATG GTAGCGTTCA 20202
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CATCATCCAA CTATAATCCA TTTCTTGGTT GGGTGCATGG TGCTCAGATG GTAGCGTTCA 60
ATATGCAGGT GAGGTGCACT TCTGTTCCTG AGCAGTTAGT TCCAGAGTGA TGGTTTAGCT 20142
||||||||
ATATGCAG.. .......... .......... .......... .......... .......... 68
CTTTGTACCT TATTTCCAAT TCAGTAAATT CGGTGAGGAA TCAATTTGCT GAATGCAGTT 20082
.......... .......... .......... .......... .......... .......... 68
AAGTTTACAT TTTATCTTAT AATTATACCT GAACGATTAT TATGGTATAA TATAACTTCA 20022
.......... .......... .......... .......... .......... .......... 68
GAATTGGTGG ATCAAATTTG AGCAACCTGG AATTTCTGGC TCCATGTTTT CTGAATGCCT 19962
.......... .......... .......... .......... .......... .......... 68
GTCAAGTTGT GACATTTGCC GCTTCTTTTA CCGTTGTCAT ATTAAAAATA CATGAAATTT 19902
.......... .......... .......... .......... .......... .......... 68
CTTGCAGGGA TATGGAAGAG CTCTTTGGTT GATGCATGGA TTTTATAAAG CTAATGGTGG 19842
||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......GGA TATGGAAGAG CTCTTTGGTT GATGCATGGA TTTTATAAAG CTAATGGTGG 121
CTGTGGTTAT GTGAAGAAAC CAGATTTCTT AATGCAAACT GATCCAGAGG TTTTTGACCC 19782
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGTGGTTAT GTGAAGAAAC CAGATTTCTT AATGCAAACT GATCCAGAGG TTTTTGACCC 181
AAAAAAATCC CTATCTCCCA AGAAAACCTT GAAGGTATGC ATGCCTGTCA TTCTTTTTGT 19722
|||||||||| |||||||||| |||||||||| ||||
AAAAAAATCC CTATCTCCCA AGAAAACCTT GAAG...... .......... .......... 215
TTGTGCTCGT CTGTGAAACC TGGAGACTTC ACTGAAGTGC TGCCTTTCAG GTGAAAGTAT 19662
||||||||||
.......... .......... .......... .......... .......... GTGAAAGTAT 225
ACATGGGGGA TGGTTGGCGG ATGGACTTCA CGCAGACCCA CTTTGATCAA TATTCTCCTC 19602
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACATGGGGGA TGGTTGGCGG ATGGACTTCA CGCAGACCCA CTTTGATCAA TATTCTCCTC 285
CAGACTTTTA TGCACGGGTA CGTACGTGGA TTGAATTTCA TACCGAAAAC GGTTCGCTAC 19542
|||||||||| |||||||
CAGACTTTTA TGCACGG... .......... .......... .......... .......... 302
TCCAAGTTGA TGTGATATTA TGGAGGTGAC GATGGAAAAT GGACTTGTGA TGGGATGATG 19482
.......... .......... .......... .......... .......... .......... 302
GATAGGTGGG GATAGCGGGA GTACCAGCGG ACTCGGTGAT GAAGAGAACG AGGGCGATAG 19422
||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
.....GTGGG GATAGCGGGA GTACCAGCGG ACTCGGTGAT GAAGAGAACG AGGGCGATAG 357
AGGATAACTG GGTGCCGGTG TGGGAGGAGG ATTTCACCTT CAAACTGACC GTGCCGGAGA 19362
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGATAACTG GGTGCCGGTG TGGGAGGAGG ATTTCACCTT CAAACTGACC GTGCCGGAGA 417
TCGCGTTGCT GCGGGTGGAG GTGCACGAGT ACGACATGTC GGAGAAGGAC GACTTCGGCG 19302
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCGCGTTGCT GCGGGTGGAG GTGCACGAGT ACGACATGTC GGAGAAGGAC GACTTCGGCG 477
GCCAGACGGT GCTGCCGGTG TCGGATCTCA TCCCGGGGAT CCGAGCGGTG GCACTCCACG 19242
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCCAGACGGT GCTGCCGGTG TCGGATCTCA TCCCGGGGAT CCGAGCGGTG GCACTCCACG 537
ACCGCAAAGG GATCAAGTTG AACAACGTCA AGCTTCTCAT GCGCTTCGAG TTTGAATGAC 19182
|||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||||||||
ACCGCAAAGG GATCAAGTTG AACAACGTCA AGCTTTTCAT GCGCTTCGAG TTTGAATGAC 597
CCAACACACC GACACTTTCT TTCTTTCTCG CCGCATCGCA TTGCACTGTG CCTGTGCTTG 19122
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCAACACACC GACACTTTCT TTCTTTCTCG CCGCATCGCA TTGCACTGTG CCTGTGCTTG 657
TGCAGCATCC ATCATTTGGT TTGGTTTTTC ATGTTCCTGT GCATACGCAT TTGTGTCTGT 19062
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGCAGCATCC ATCATTTGGT TTGGTTTTTC ATGTTCCTGT GCATACGCAT TTGTGTCTGT 717
ACATAGGCTC GGTCCTGTAT ATTGTTTGTG AGTAACATGT AATAATAAGG CTTCACGCCA 19002
|||||||||| |||||||||| |||||||||| || ||||| |||||||||| ||||||||||
ACATAGGCTC GGTCCTGTAT ATTGTTTGTG AGGGGCATGT AATAATAAGG CTTCACGCCA 777
TGTTC 18997
|||||
TGTTC 782
hqPGS_AP005199-_29656473- (20261 20194,19894 19748,19671 19585,19476 18997)
<A NAME="PGS5@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 5 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29633589" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29633589-</A>)
1 TTTTTGACCC AAAAAAATCC CTATCTCCCA AGAAAACTTT GAAGGTGAAA GTATACATGG
61 GGGATGGTTG GCGGATGGAC TTCACGCAGA CCCACTTTGA TCAATATTCT CCTCCAGACT
121 TTTATGCACG GGTGGGGATA GCGGGAGTAC CAGCGGACTC GGTGATGAAG AGAACGAGGG
181 CGATAGAGGA TAACTGGGTG CCGGTGTGGG AGGAGGATTT CACTTTCAAA CTGACCGTGC
241 CGGAGATCGC GTTGCTGCGG GTGGAGGTGC ACGAGTACGA CATGTCGGAG AAGGACGACT
301 TCGGCGGCCA GACGGTGCTG CCGGTGTCGG ATCTCATCCC GGGGATCCGA GCGGTGGCAC
361 TCCACGACCG CAAAGGGATC AAGTTGAACA ACGTCAAGCT TTTCATGCGC TTCGAGTTTG
421 AATGACCCAA CACACCGACA CTTTCTTTCT TTCTCGCCGC ATCGCATTGC ACTGTGCCTG
481 TGCTTGTGCA GCATCCATCA TTTGGTTTGG TTTTTCATGT TCCTGTGCAT ACGCATTTGT
541 GTCTGTACAT AGGCTCGGTC CTGTATATTG TTTGTGAGTA ACATGTAATA ATAAGGTTAC
601 ACGCCATGTT CTTCAAAAAA A
Predicted gene structure (within gDNA segment 20096 to 18647):
Exon 1 19791 19748 ( 44 n); cDNA 1 44 ( 44 n); score: 0.977
Intron 1 19747 19672 ( 76 n); Pd: 0.993 (s: 0.98), Pa: 0.371 (s: 1.00)
Exon 2 19671 19585 ( 87 n); cDNA 45 131 ( 87 n); score: 1.000
Intron 2 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 1.00)
Exon 3 19476 18997 ( 480 n); cDNA 132 611 ( 480 n); score: 0.992
MATCH AP005199- 29633589- 0.993 611 0.984 C
PGS_AP005199-_29633589- (19791 19748,19671 19585,19476 18997)
Alignment (genomic DNA sequence = upper lines):
TTTTTGACCC AAAAAAATCC CTATCTCCCA AGAAAACCTT GAAGGTATGC ATGCCTGTCA 19732
|||||||||| |||||||||| |||||||||| ||||||| || ||||
TTTTTGACCC AAAAAAATCC CTATCTCCCA AGAAAACTTT GAAG...... .......... 44
TTCTTTTTGT TTGTGCTCGT CTGTGAAACC TGGAGACTTC ACTGAAGTGC TGCCTTTCAG 19672
.......... .......... .......... .......... .......... .......... 44
GTGAAAGTAT ACATGGGGGA TGGTTGGCGG ATGGACTTCA CGCAGACCCA CTTTGATCAA 19612
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGAAAGTAT ACATGGGGGA TGGTTGGCGG ATGGACTTCA CGCAGACCCA CTTTGATCAA 104
TATTCTCCTC CAGACTTTTA TGCACGGGTA CGTACGTGGA TTGAATTTCA TACCGAAAAC 19552
|||||||||| |||||||||| |||||||
TATTCTCCTC CAGACTTTTA TGCACGG... .......... .......... .......... 131
GGTTCGCTAC TCCAAGTTGA TGTGATATTA TGGAGGTGAC GATGGAAAAT GGACTTGTGA 19492
.......... .......... .......... .......... .......... .......... 131
TGGGATGATG GATAGGTGGG GATAGCGGGA GTACCAGCGG ACTCGGTGAT GAAGAGAACG 19432
||||| |||||||||| |||||||||| |||||||||| ||||||||||
.......... .....GTGGG GATAGCGGGA GTACCAGCGG ACTCGGTGAT GAAGAGAACG 176
AGGGCGATAG AGGATAACTG GGTGCCGGTG TGGGAGGAGG ATTTCACCTT CAAACTGACC 19372
|||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||||||||||
AGGGCGATAG AGGATAACTG GGTGCCGGTG TGGGAGGAGG ATTTCACTTT CAAACTGACC 236
GTGCCGGAGA TCGCGTTGCT GCGGGTGGAG GTGCACGAGT ACGACATGTC GGAGAAGGAC 19312
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGCCGGAGA TCGCGTTGCT GCGGGTGGAG GTGCACGAGT ACGACATGTC GGAGAAGGAC 296
GACTTCGGCG GCCAGACGGT GCTGCCGGTG TCGGATCTCA TCCCGGGGAT CCGAGCGGTG 19252
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GACTTCGGCG GCCAGACGGT GCTGCCGGTG TCGGATCTCA TCCCGGGGAT CCGAGCGGTG 356
GCACTCCACG ACCGCAAAGG GATCAAGTTG AACAACGTCA AGCTTCTCAT GCGCTTCGAG 19192
|||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ||||||||||
GCACTCCACG ACCGCAAAGG GATCAAGTTG AACAACGTCA AGCTTTTCAT GCGCTTCGAG 416
TTTGAATGAC CCAACACACC GACACTTTCT TTCTTTCTCG CCGCATCGCA TTGCACTGTG 19132
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTTGAATGAC CCAACACACC GACACTTTCT TTCTTTCTCG CCGCATCGCA TTGCACTGTG 476
CCTGTGCTTG TGCAGCATCC ATCATTTGGT TTGGTTTTTC ATGTTCCTGT GCATACGCAT 19072
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCTGTGCTTG TGCAGCATCC ATCATTTGGT TTGGTTTTTC ATGTTCCTGT GCATACGCAT 536
TTGTGTCTGT ACATAGGCTC GGTCCTGTAT ATTGTTTGTG AGTAACATGT AATAATAAGG 19012
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTGTGTCTGT ACATAGGCTC GGTCCTGTAT ATTGTTTGTG AGTAACATGT AATAATAAGG 596
CTTCACGCCA TGTTC 18997
| ||||||| |||||
TTACACGCCA TGTTC 611
hqPGS_AP005199-_29633589- (19791 19748,19671 19585,19476 18997)
<A NAME="PGS14@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 14 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=2797925" TARGET="NUCLEOTIDE SEQUENCE SEARCH">2797925+</A>)
1 GCCTTTCAGG TGAAAGTATA CATGGGGGAT GGTTGGCGGA TGGACTTCAC GCAGACCCAC
61 TTTGATCAAT TAACTCCTCC AGACTTTTAT GCACGGGTGG GGATAGCGGG AGTACCAGCG
121 ACTCGGTGAT GAAGAGAACG AGGGCGATAG AGGATAACTG GGTTGCCGGT GTGGGAGGAG
181 GATTTCACCT TCAAACTGAC CGTTNCGAGA TCTGCGTTGC TGCGGGTTGG A
Predicted gene structure (within gDNA segment 19980 to 19021):
Exon 1 19680 19585 ( 96 n); cDNA 1 96 ( 96 n); score: 0.969
Intron 1 19584 19477 ( 108 n); Pd: 0.331 (s: 0.94), Pa: 0.946 (s: 0.98)
Exon 2 19476 19347 ( 130 n); cDNA 97 226 ( 130 n); score: 0.938
MATCH AP005199- 2797925+ 0.951 226 0.978 C
PGS_AP005199-_2797925+ (19680 19585,19476 19347)
Alignment (genomic DNA sequence = upper lines):
GCCTTTCAGG TGAAAGTATA CATGGGGGAT GGTTGGCGGA TGGACTTCAC GCAGACCCAC 19621
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCCTTTCAGG TGAAAGTATA CATGGGGGAT GGTTGGCGGA TGGACTTCAC GCAGACCCAC 60
TTTGATCAAT ATTCTCCTCC AGACTTTTAT GCACGGGTAC GTACGTGGAT TGAATTTCAT 19561
|||||||||| ||||||| |||||||||| ||||||
TTTGATCAAT TAACTCCTCC AGACTTTTAT GCACGG.... .......... .......... 96
ACCGAAAACG GTTCGCTACT CCAAGTTGAT GTGATATTAT GGAGGTGACG ATGGAAAATG 19501
.......... .......... .......... .......... .......... .......... 96
GACTTGTGAT GGGATGATGG ATAGGTGGGG ATAGCGGGAG TACCAGCGGA CTCGGTGATG 19441
|||||| |||||||||| ||||||| || ||||||||||
.......... .......... ....GTGGGG ATAGCGGGAG TACCAGC-GA CTCGGTGATG 131
AAGAGAACGA GGGCGATAGA GGATAACTGG G-TGCCGGTG TGGGAGGAGG ATTTCACCTT 19382
|||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ||||||||||
AAGAGAACGA GGGCGATAGA GGATAACTGG GTTGCCGGTG TGGGAGGAGG ATTTCACCTT 191
CAAACTGACC GTGCCGGAGA TC-GCGTTGC TGCGGG 19347
|||||||||| || | |||| || ||||||| ||||||
CAAACTGACC GTTNC-GAGA TCTGCGTTGC TGCGGG 226
hqPGS_AP005199-_2797925+ (19680 19585,19476 19347)
<A NAME="PGS15@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 15 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=33382000" TARGET="NUCLEOTIDE SEQUENCE SEARCH">33382000+</A>)
1 AAACACCTTA TTACCATCAA AGCAGGAAAG CCAAAAGGTA CTCTACTTGA TGCCTTGCAG
61 AGTGACCCAG AAAAGGTTAG AAGGCTCAGT TTGAGCGAGC AACAACTTGC CAAATTGGCA
121 GATCATCATG GTACCGAAAT TGTCAGGTTC ACACAGAGAA ACCTACTGAG GATATACCCA
181 AAGGGCACTC GGGTCACATC ATCCAACTAT AATCCATTTC TTGGTTGGGT ACATGGTGCT
241 CAGATGGTAG CGTTCAATAT GCAGGGATAT GGAAGAGCTC TTTGGTTGAT GCATGGATTT
301 TATAAAGCTA ATGGTGGCTG TGGTTATGTG AAGAAACCAG ATTTCTTAAT GCAAACTGAT
361 CCAGAGGTTT TTGACCCAAA AAAATCCCTA TCTCCCAAGA AAACCTTGAA GGTGAAAGTA
421 TACATGGGGG ATGGTTGGCG GATGGACTTC ACGCAGACCC ACTTTGATCA ATATTCTCCT
481 CCAGACTTTT ATGCACGGGT GGGGATAGCG GGAGTACNNN CGGACTCGGT GANNNNNNNN
541 ACNNNNNCGA TAGANNATAA CTGGGTGCCG GTGTG
Predicted gene structure (within gDNA segment 20894 to 19095):
Exon 1 20594 20449 ( 146 n); cDNA 1 146 ( 146 n); score: 0.986
Intron 1 20448 20312 ( 137 n); Pd: 0.817 (s: 0.98), Pa: 0.859 (s: 1.00)
Exon 2 20311 20194 ( 118 n); cDNA 147 264 ( 118 n); score: 0.992
Intron 2 20193 19895 ( 299 n); Pd: 0.842 (s: 0.98), Pa: 0.981 (s: 1.00)
Exon 3 19894 19748 ( 147 n); cDNA 265 411 ( 147 n); score: 1.000
Intron 3 19747 19672 ( 76 n); Pd: 0.993 (s: 1.00), Pa: 0.371 (s: 1.00)
Exon 4 19671 19585 ( 87 n); cDNA 412 498 ( 87 n); score: 1.000
Intron 4 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 0.68)
Exon 5 19476 19400 ( 77 n); cDNA 499 575 ( 77 n); score: 0.766
MATCH AP005199- 33382000+ 0.963 575 1.000 C
PGS_AP005199-_33382000+ (20594 20449,20311 20194,19894 19748,19671 19585,19476 19400)
Alignment (genomic DNA sequence = upper lines):
AAACACCTTA TTACCATCAA AGCAGGAAAG CCAAAAGGTA CTCTACTTGA TGCCTTACAG 20535
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| |||
AAACACCTTA TTACCATCAA AGCAGGAAAG CCAAAAGGTA CTCTACTTGA TGCCTTGCAG 60
AGTGACCCAG AAAAGGTTAG AAGGCTCAGT TTGAGCGAGC AACAACTTGC CAAATTGGCA 20475
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGTGACCCAG AAAAGGTTAG AAGGCTCAGT TTGAGCGAGC AACAACTTGC CAAATTGGCA 120
GATCATCATG GTACCGAAAT TGTAAGGTAC GAATCTGCTA AGTGAATGAA GTTGCTCTTC 20415
|||||||||| |||||||||| ||| ||
GATCATCATG GTACCGAAAT TGTCAG.... .......... .......... .......... 146
CTTTCCATCT TCAGCATCAG TGAAAATGTT TTTTTTTTTT TGCACTTTAT AGGCCATCTC 20355
.......... .......... .......... .......... .......... .......... 146
TCGCTAACTC TGCTGAAATG CCCAATCTTT TTGGCCAAAA CAGGTTCACA CAGAGAAACC 20295
||||||| ||||||||||
.......... .......... .......... .......... ...GTTCACA CAGAGAAACC 163
TACTGAGGAT ATACCCAAAG GGCACTCGGG TCACATCATC CAACTATAAT CCATTTCTTG 20235
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TACTGAGGAT ATACCCAAAG GGCACTCGGG TCACATCATC CAACTATAAT CCATTTCTTG 223
GTTGGGTGCA TGGTGCTCAG ATGGTAGCGT TCAATATGCA GGTGAGGTGC ACTTCTGTTC 20175
||||||| || |||||||||| |||||||||| |||||||||| |
GTTGGGTACA TGGTGCTCAG ATGGTAGCGT TCAATATGCA G......... .......... 264
CTGAGCAGTT AGTTCCAGAG TGATGGTTTA GCTCTTTGTA CCTTATTTCC AATTCAGTAA 20115
.......... .......... .......... .......... .......... .......... 264
ATTCGGTGAG GAATCAATTT GCTGAATGCA GTTAAGTTTA CATTTTATCT TATAATTATA 20055
.......... .......... .......... .......... .......... .......... 264
CCTGAACGAT TATTATGGTA TAATATAACT TCAGAATTGG TGGATCAAAT TTGAGCAACC 19995
.......... .......... .......... .......... .......... .......... 264
TGGAATTTCT GGCTCCATGT TTTCTGAATG CCTGTCAAGT TGTGACATTT GCCGCTTCTT 19935
.......... .......... .......... .......... .......... .......... 264
TTACCGTTGT CATATTAAAA ATACATGAAA TTTCTTGCAG GGATATGGAA GAGCTCTTTG 19875
|||||||||| ||||||||||
.......... .......... .......... .......... GGATATGGAA GAGCTCTTTG 284
GTTGATGCAT GGATTTTATA AAGCTAATGG TGGCTGTGGT TATGTGAAGA AACCAGATTT 19815
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTTGATGCAT GGATTTTATA AAGCTAATGG TGGCTGTGGT TATGTGAAGA AACCAGATTT 344
CTTAATGCAA ACTGATCCAG AGGTTTTTGA CCCAAAAAAA TCCCTATCTC CCAAGAAAAC 19755
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTTAATGCAA ACTGATCCAG AGGTTTTTGA CCCAAAAAAA TCCCTATCTC CCAAGAAAAC 404
CTTGAAGGTA TGCATGCCTG TCATTCTTTT TGTTTGTGCT CGTCTGTGAA ACCTGGAGAC 19695
|||||||
CTTGAAG... .......... .......... .......... .......... .......... 411
TTCACTGAAG TGCTGCCTTT CAGGTGAAAG TATACATGGG GGATGGTTGG CGGATGGACT 19635
||||||| |||||||||| |||||||||| ||||||||||
.......... .......... ...GTGAAAG TATACATGGG GGATGGTTGG CGGATGGACT 448
TCACGCAGAC CCACTTTGAT CAATATTCTC CTCCAGACTT TTATGCACGG GTACGTACGT 19575
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCACGCAGAC CCACTTTGAT CAATATTCTC CTCCAGACTT TTATGCACGG .......... 498
GGATTGAATT TCATACCGAA AACGGTTCGC TACTCCAAGT TGATGTGATA TTATGGAGGT 19515
.......... .......... .......... .......... .......... .......... 498
GACGATGGAA AATGGACTTG TGATGGGATG ATGGATAGGT GGGGATAGCG GGAGTACCAG 19455
|| |||||||||| |||||||
.......... .......... .......... ........GT GGGGATAGCG GGAGTACNNN 520
CGGACTCGGT GATGAAGAGA ACGAGGGCGA TAGAGGATAA CTGGGTGCCG GTGTG 19400
|||||||||| || || ||| |||| |||| |||||||||| |||||
CGGACTCGGT GANNNNNNNN ACNNNNNCGA TAGANNATAA CTGGGTGCCG GTGTG 575
hqPGS_AP005199-_33382000+ (20594 20449,20311 20194,19894 19748,19671 19585,19476 19400)
<A NAME="PGS16@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 16 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=27578307" TARGET="NUCLEOTIDE SEQUENCE SEARCH">27578307+</A>)
1 CCGCCACTGA CGATGCCGAG GGGGGAAAAG AAGTCCCAGA TATTCACTCT CAAATCCACT
61 CTGCCACTAA ACATGACCAA AGAGAAGATG ACGACGACAC CGATGAAGAC GAAGATGACG
121 AGGAGGAGGA GCAGAAAATG CAACAGCATC TAGCTCCACA GTACAAACAC CTTATTACCA
181 TCAAAGCAGG AAAGCCAAAA GGTACTCTAC TTGATGCCTT ACAGAGTGAC CCAGAAAAGG
241 TTAGAAGGCT CAGTTTGAGC GAGCAACAAC TTGCCAAATT GGCAGATCAT CATGGTACCG
301 AAATTGTAAG GTTCACACAG AGAAACCTAC TGAGGATATA CCCAAAGGGC ACTCGGGTCA
361 CATCATCCAA CTATAATCCA TTTCTTGGTT GGGTGCATGG TGCTCAGATG GTAGCGTTCA
421 ATATGCAGGG ATATGGAAGA GCTCTTTGGT TGATGCATGG ATTTTATAAA GCTAATGGTG
481 GCTGTGGTTA TGTGAAGAAA CCAGATTTCT TAATGCAAAC TGATCCAGAG GTTTTTGACC
541 CAAAAAAATC CCTATCTCCC AAGAAAACCT TGAAGGTGAA AGTATACATG GGGGATGGTT
601 GGCGGATGGA CTTCACGCAG ACCCACTTTG ATCAATATTC TCCTCCAGAC TTTTATGCAC
661 GGGTGGGGAT AGCGGGAGTA CCAGCGGA
Predicted gene structure (within gDNA segment 21153 to 19146):
Exon 1 20853 20783 ( 71 n); cDNA 1 71 ( 71 n); score: 0.958
Intron 1 20782 20688 ( 95 n); Pd: 0.994 (s: 1.00), Pa: 0.861 (s: 1.00)
Exon 2 20687 20449 ( 239 n); cDNA 72 310 ( 239 n); score: 1.000
Intron 2 20448 20312 ( 137 n); Pd: 0.817 (s: 1.00), Pa: 0.859 (s: 1.00)
Exon 3 20311 20194 ( 118 n); cDNA 311 428 ( 118 n); score: 1.000
Intron 3 20193 19895 ( 299 n); Pd: 0.842 (s: 1.00), Pa: 0.981 (s: 1.00)
Exon 4 19894 19748 ( 147 n); cDNA 429 575 ( 147 n); score: 1.000
Intron 4 19747 19672 ( 76 n); Pd: 0.993 (s: 1.00), Pa: 0.371 (s: 1.00)
Exon 5 19671 19585 ( 87 n); cDNA 576 662 ( 87 n); score: 1.000
Intron 5 19584 19477 ( 108 n); Pd: 0.331 (s: 1.00), Pa: 0.946 (s: 0)
Exon 6 19476 19451 ( 26 n); cDNA 663 688 ( 26 n); score: 1.000
MATCH AP005199- 27578307+ 0.995 688 1.000 C
PGS_AP005199-_27578307+ (20853 20783,20687 20449,20311 20194,19894 19748,19671 19585,19476 19451)
Alignment (genomic DNA sequence = upper lines):
CCGCCACTGA CGATGCCGCA TGGGGAAAAG AAGTCCCAGA TATTCACTCT CAAATCCACT 20794
|||||||||| |||||||| ||||||||| |||||||||| |||||||||| ||||||||||
CCGCCACTGA CGATGCCGAG GGGGGAAAAG AAGTCCCAGA TATTCACTCT CAAATCCACT 60
CTGCCACTAA AGTACTCCTC ATATTACTAG CTTCTTCTTC TTCTTCTTAT GCTCATAGTA 20734
|||||||||| |
CTGCCACTAA A......... .......... .......... .......... .......... 71
GAGCCAGTTT CTTACCTGCA GGGCACACTT TTGTTTCATT CTGCAGCATG ACCAAAGAGA 20674
|||| ||||||||||
.......... .......... .......... .......... ......CATG ACCAAAGAGA 85
AGATGACGAC GACACCGATG AAGACGAAGA TGACGAGGAG GAGGAGCAGA AAATGCAACA 20614
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGATGACGAC GACACCGATG AAGACGAAGA TGACGAGGAG GAGGAGCAGA AAATGCAACA 145
GCATCTAGCT CCACAGTACA AACACCTTAT TACCATCAAA GCAGGAAAGC CAAAAGGTAC 20554
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCATCTAGCT CCACAGTACA AACACCTTAT TACCATCAAA GCAGGAAAGC CAAAAGGTAC 205
TCTACTTGAT GCCTTACAGA GTGACCCAGA AAAGGTTAGA AGGCTCAGTT TGAGCGAGCA 20494
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCTACTTGAT GCCTTACAGA GTGACCCAGA AAAGGTTAGA AGGCTCAGTT TGAGCGAGCA 265
ACAACTTGCC AAATTGGCAG ATCATCATGG TACCGAAATT GTAAGGTACG AATCTGCTAA 20434
|||||||||| |||||||||| |||||||||| |||||||||| |||||
ACAACTTGCC AAATTGGCAG ATCATCATGG TACCGAAATT GTAAG..... .......... 310
GTGAATGAAG TTGCTCTTCC TTTCCATCTT CAGCATCAGT GAAAATGTTT TTTTTTTTTT 20374
.......... .......... .......... .......... .......... .......... 310
GCACTTTATA GGCCATCTCT CGCTAACTCT GCTGAAATGC CCAATCTTTT TGGCCAAAAC 20314
.......... .......... .......... .......... .......... .......... 310
AGGTTCACAC AGAGAAACCT ACTGAGGATA TACCCAAAGG GCACTCGGGT CACATCATCC 20254
|||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
..GTTCACAC AGAGAAACCT ACTGAGGATA TACCCAAAGG GCACTCGGGT CACATCATCC 368
AACTATAATC CATTTCTTGG TTGGGTGCAT GGTGCTCAGA TGGTAGCGTT CAATATGCAG 20194
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AACTATAATC CATTTCTTGG TTGGGTGCAT GGTGCTCAGA TGGTAGCGTT CAATATGCAG 428
GTGAGGTGCA CTTCTGTTCC TGAGCAGTTA GTTCCAGAGT GATGGTTTAG CTCTTTGTAC 20134
.......... .......... .......... .......... .......... .......... 428
CTTATTTCCA ATTCAGTAAA TTCGGTGAGG AATCAATTTG CTGAATGCAG TTAAGTTTAC 20074
.......... .......... .......... .......... .......... .......... 428
ATTTTATCTT ATAATTATAC CTGAACGATT ATTATGGTAT AATATAACTT CAGAATTGGT 20014
.......... .......... .......... .......... .......... .......... 428
GGATCAAATT TGAGCAACCT GGAATTTCTG GCTCCATGTT TTCTGAATGC CTGTCAAGTT 19954
.......... .......... .......... .......... .......... .......... 428
GTGACATTTG CCGCTTCTTT TACCGTTGTC ATATTAAAAA TACATGAAAT TTCTTGCAGG 19894
|
.......... .......... .......... .......... .......... .........G 429
GATATGGAAG AGCTCTTTGG TTGATGCATG GATTTTATAA AGCTAATGGT GGCTGTGGTT 19834
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATATGGAAG AGCTCTTTGG TTGATGCATG GATTTTATAA AGCTAATGGT GGCTGTGGTT 489
ATGTGAAGAA ACCAGATTTC TTAATGCAAA CTGATCCAGA GGTTTTTGAC CCAAAAAAAT 19774
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATGTGAAGAA ACCAGATTTC TTAATGCAAA CTGATCCAGA GGTTTTTGAC CCAAAAAAAT 549
CCCTATCTCC CAAGAAAACC TTGAAGGTAT GCATGCCTGT CATTCTTTTT GTTTGTGCTC 19714
|||||||||| |||||||||| ||||||
CCCTATCTCC CAAGAAAACC TTGAAG.... .......... .......... .......... 575
GTCTGTGAAA CCTGGAGACT TCACTGAAGT GCTGCCTTTC AGGTGAAAGT ATACATGGGG 19654
|||||||| ||||||||||
.......... .......... .......... .......... ..GTGAAAGT ATACATGGGG 593
GATGGTTGGC GGATGGACTT CACGCAGACC CACTTTGATC AATATTCTCC TCCAGACTTT 19594
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATGGTTGGC GGATGGACTT CACGCAGACC CACTTTGATC AATATTCTCC TCCAGACTTT 653
TATGCACGGG TACGTACGTG GATTGAATTT CATACCGAAA ACGGTTCGCT ACTCCAAGTT 19534
|||||||||
TATGCACGG. .......... .......... .......... .......... .......... 662
GATGTGATAT TATGGAGGTG ACGATGGAAA ATGGACTTGT GATGGGATGA TGGATAGGTG 19474
|||
.......... .......... .......... .......... .......... .......GTG 665
GGGATAGCGG GAGTACCAGC GGA 19451
|||||||||| |||||||||| |||
GGGATAGCGG GAGTACCAGC GGA 688
hqPGS_AP005199-_27578307+ (20853 20783,20687 20449,20311 20194,19894 19748,19671 19585,19476 19451)
<A NAME="PGS17@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 17 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=14571346" TARGET="NUCLEOTIDE SEQUENCE SEARCH">14571346+</A>)
1 ACCGAAATTG TCAGGTTCAC ACAGAGAAAC CTACTGAGGA TATACCCAAA GGGCACTCGG
61 GTCACATCAT CCAACTATAA TCCATTTCTT GGTTGGGTGC ATGGTGCTCA GATGGTAGCG
121 TTCAATATGC AGGGATATGG AAGAGCTCTT TGGTTGATGC ATGGATTTTA TAAAGCTAAT
181 GGTGGCTGTG GTTATGTGAA GAAACCAGAT TTCTTAATGC AAACTGATCC AGAGGTTTTT
241 GACCCAAAAA AATCCCTATC TTCCAAGAAA ACCTTGAAGG TGAAAGTATA CATGGGGGAT
301 GGTTGGCGGG TGGACTTCAC GCAAGACCCA CTTTGATCAA TATTCTTCTT CAAACTTTTA
361 TGCACGGGTG GGGATAGCGG GAGTACCTCG GCCGCGACCA CGCTA
Predicted gene structure (within gDNA segment 20669 to 19062):
Exon 1 20462 20449 ( 14 n); cDNA 1 14 ( 14 n); score: 0.929
Intron 1 20448 20312 ( 137 n); Pd: 0.817 (s: 0), Pa: 0.859 (s: 1.00)
Exon 2 20311 20194 ( 118 n); cDNA 15 132 ( 118 n); score: 1.000
Intron 2 20193 19895 ( 299 n); Pd: 0.842 (s: 1.00), Pa: 0.981 (s: 1.00)
Exon 3 19894 19748 ( 147 n); cDNA 133 279 ( 147 n); score: 0.993
Intron 3 19747 19672 ( 76 n); Pd: 0.993 (s: 0.98), Pa: 0.371 (s: 0.94)
Exon 4 19671 19585 ( 87 n); cDNA 280 367 ( 88 n); score: 0.931
Intron 4 19584 19477 ( 108 n); Pd: 0.331 (s: 0.90), Pa: 0.946 (s: 0)
Exon 5 19476 19457 ( 20 n); cDNA 368 387 ( 20 n); score: 1.000
MATCH AP005199- 14571346+ 0.980 386 0.953 C
PGS_AP005199-_14571346+ (20462 20449,20311 20194,19894 19748,19671 19585,19476 19457)
Alignment (genomic DNA sequence = upper lines):
ACCGAAATTG TAAGGTACGA ATCTGCTAAG TGAATGAAGT TGCTCTTCCT TTCCATCTTC 20403
|||||||||| | ||
ACCGAAATTG TCAG...... .......... .......... .......... .......... 14
AGCATCAGTG AAAATGTTTT TTTTTTTTTG CACTTTATAG GCCATCTCTC GCTAACTCTG 20343
.......... .......... .......... .......... .......... .......... 14
CTGAAATGCC CAATCTTTTT GGCCAAAACA GGTTCACACA GAGAAACCTA CTGAGGATAT 20283
||||||||| |||||||||| ||||||||||
.......... .......... .......... .GTTCACACA GAGAAACCTA CTGAGGATAT 43
ACCCAAAGGG CACTCGGGTC ACATCATCCA ACTATAATCC ATTTCTTGGT TGGGTGCATG 20223
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACCCAAAGGG CACTCGGGTC ACATCATCCA ACTATAATCC ATTTCTTGGT TGGGTGCATG 103
GTGCTCAGAT GGTAGCGTTC AATATGCAGG TGAGGTGCAC TTCTGTTCCT GAGCAGTTAG 20163
|||||||||| |||||||||| |||||||||
GTGCTCAGAT GGTAGCGTTC AATATGCAG. .......... .......... .......... 132
TTCCAGAGTG ATGGTTTAGC TCTTTGTACC TTATTTCCAA TTCAGTAAAT TCGGTGAGGA 20103
.......... .......... .......... .......... .......... .......... 132
ATCAATTTGC TGAATGCAGT TAAGTTTACA TTTTATCTTA TAATTATACC TGAACGATTA 20043
.......... .......... .......... .......... .......... .......... 132
TTATGGTATA ATATAACTTC AGAATTGGTG GATCAAATTT GAGCAACCTG GAATTTCTGG 19983
.......... .......... .......... .......... .......... .......... 132
CTCCATGTTT TCTGAATGCC TGTCAAGTTG TGACATTTGC CGCTTCTTTT ACCGTTGTCA 19923
.......... .......... .......... .......... .......... .......... 132
TATTAAAAAT ACATGAAATT TCTTGCAGGG ATATGGAAGA GCTCTTTGGT TGATGCATGG 19863
|| |||||||||| |||||||||| ||||||||||
.......... .......... ........GG ATATGGAAGA GCTCTTTGGT TGATGCATGG 164
ATTTTATAAA GCTAATGGTG GCTGTGGTTA TGTGAAGAAA CCAGATTTCT TAATGCAAAC 19803
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATTTTATAAA GCTAATGGTG GCTGTGGTTA TGTGAAGAAA CCAGATTTCT TAATGCAAAC 224
TGATCCAGAG GTTTTTGACC CAAAAAAATC CCTATCTCCC AAGAAAACCT TGAAGGTATG 19743
|||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||
TGATCCAGAG GTTTTTGACC CAAAAAAATC CCTATCTTCC AAGAAAACCT TGAAG..... 279
CATGCCTGTC ATTCTTTTTG TTTGTGCTCG TCTGTGAAAC CTGGAGACTT CACTGAAGTG 19683
.......... .......... .......... .......... .......... .......... 279
CTGCCTTTCA GGTGAAAGTA TACATGGGGG ATGGTTGGCG GATGGACTTC ACGC-AGACC 19624
||||||||| |||||||||| |||||||||| | |||||||| |||| |||||
.......... .GTGAAAGTA TACATGGGGG ATGGTTGGCG GGTGGACTTC ACGCAAGACC 328
CACTTTGATC AATATTCTCC TCCAGACTTT TATGCACGGG TACGTACGTG GATTGAATTT 19564
|||||||||| |||||||| | | || ||||| |||||||||
CACTTTGATC AATATTCTTC TTCAAACTTT TATGCACGG. .......... .......... 367
CATACCGAAA ACGGTTCGCT ACTCCAAGTT GATGTGATAT TATGGAGGTG ACGATGGAAA 19504
.......... .......... .......... .......... .......... .......... 367
ATGGACTTGT GATGGGATGA TGGATAGGTG GGGATAGCGG GAGTACC 19457
||| |||||||||| |||||||
.......... .......... .......GTG GGGATAGCGG GAGTACC 387
hqPGS_AP005199-_14571346+ (20462 20449,20311 20194,19894 19748,19671 19585,19476 19457)
<A NAME="PGS1@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 1 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29633932" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29633932-</A>)
1 TATGCACGGG TGGGGATAGC GGGAGTACCA GCGGACTCGG TGATAAAGAG AACGAGGGCG
61 ATATAGCATA ACTGGGTGCC GGTGTGGGAG GAGTATTTCA CCTTCAAGCT GACCGTGCCG
121 GAGATCGCGT TCCTGCGGGT GGAGGTGCAC GAGTACGACA TGTCGGAGAA GGACGACTTC
181 GGCGGCCAGA CGGTGCTGCC GGTGTCGGAT CTCATCCCGG GGATCCGAGC GGTGGCACTC
241 CTCGACCGCA AAGGGATCAA GTTGAACAAC GTCAAGCTTC TCATGCGTCT TCGAGTTTGA
301 ATGACCCAAC ACACCGACAC TTTCTTTCTT TCTCGCCGCA TCGCATTGCA CTGTGCCTGT
361 GCTTGTGCAG CATCCATCAT TTGGTTTGGT TTTTCATGTT CCTGTGCAAA CGCATTTGTG
421 TCTGTACATA GGCTCGGTCC TGTATATTGT TTGTGAGTAA CATGTAATAA TAAGGCTTCA
481 CGCCATGTTC ATTCTCCTGT TTGAACCCTC CCAAATATAT TAATACCGAA GGTACAAAAT
541 TGTTCAACGG C
Predicted gene structure (within gDNA segment 19822 to 18591):
Exon 1 19593 19585 ( 9 n); cDNA 1 9 ( 9 n); score: 1.000
Intron 1 19584 19477 ( 108 n); Pd: 0.331 (s: 0), Pa: 0.946 (s: 0.98)
Exon 2 19476 18935 ( 542 n); cDNA 10 551 ( 542 n); score: 0.970
MATCH AP005199- 29633932- 0.970 551 1.000 C
PGS_AP005199-_29633932- (19593 19585,19476 18935)
Alignment (genomic DNA sequence = upper lines):
TATGCACGGG TACGTACGTG GATTGAATTT CATACCGAAA ACGGTTCGCT ACTCCAAGTT 19534
|||||||||
TATGCACGG. .......... .......... .......... .......... .......... 9
GATGTGATAT TATGGAGGTG ACGATGGAAA ATGGACTTGT GATGGGATGA TGGATAGGTG 19474
|||
.......... .......... .......... .......... .......... .......GTG 12
GGGATAGCGG GAGTACCAGC GGACTCGGTG ATGAAGAGAA CGAGGGCGAT AGAGGATAAC 19414
|||||||||| |||||||||| |||||||||| || ||||||| |||||||||| | || |||||
GGGATAGCGG GAGTACCAGC GGACTCGGTG ATAAAGAGAA CGAGGGCGAT ATAGCATAAC 72
TGGGTGCCGG TGTGGGAGGA GGATTTCACC TTCAAACTGA CCGTGCCGGA GATCGCGTTG 19354
|||||||||| |||||||||| | |||||||| ||||| |||| |||||||||| |||||||||
TGGGTGCCGG TGTGGGAGGA GTATTTCACC TTCAAGCTGA CCGTGCCGGA GATCGCGTTC 132
CTGCGGGTGG AGGTGCACGA GTACGACATG TCGGAGAAGG ACGACTTCGG CGGCCAGACG 19294
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTGCGGGTGG AGGTGCACGA GTACGACATG TCGGAGAAGG ACGACTTCGG CGGCCAGACG 192
GTGCTGCCGG TGTCGGATCT CATCCCGGGG ATCCGAGCGG TGGCACTCCA CGACCGCAAA 19234
|||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||||
GTGCTGCCGG TGTCGGATCT CATCCCGGGG ATCCGAGCGG TGGCACTCCT CGACCGCAAA 252
GGGATCAAGT TGAACAACGT CAAGCTTCTC ATGCG-CTTC GAGTTTGAAT GACCCAACAC 19175
|||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||||||||
GGGATCAAGT TGAACAACGT CAAGCTTCTC ATGCGTCTTC GAGTTTGAAT GACCCAACAC 312
ACCGACACTT TCTTTCTTTC TCGCCGCATC GCATTGCACT GTGCCTGTGC TTGTGCAGCA 19115
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACCGACACTT TCTTTCTTTC TCGCCGCATC GCATTGCACT GTGCCTGTGC TTGTGCAGCA 372
TCCATCATTT GGTTTGGTTT TTCATGTTCC TGTGCATACG CATTTGTGTC TGTACATAGG 19055
|||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ||||||||||
TCCATCATTT GGTTTGGTTT TTCATGTTCC TGTGCAAACG CATTTGTGTC TGTACATAGG 432
CTCGGTCCTG TATATTGTTT GTGAGTAACA TGTAATAATA AGGCTTCACG CCATGTTCAT 18995
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCGGTCCTG TATATTGTTT GTGAGTAACA TGTAATAATA AGGCTTCACG CCATGTTCAT 492
TCCTCCTGTT TGAACCCCTC CAAATATATT AATACCGAAG GTACAAAATA TCTCAACGGC 18935
| |||||||| ||||||| | |||||||||| |||||||||| ||||||||| ||||||||
T-CTCCTGTT TGAACCCTCC CAAATATATT AATACCGAAG GTACAAAATT GTTCAACGGC 551
hqPGS_AP005199-_29633932- (19476 18935)
<A NAME="PGS9@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 9 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=18387762" TARGET="NUCLEOTIDE SEQUENCE SEARCH">18387762+</A>)
1 CAAAGGGATC CAAGTTGAAC AACGTCCAAG CTTCTCATGC GCTTCGAGTT TGAATGACCC
61 CCAACACCAC CCGACACCTT TCTTTCCTCG CCGCCACTTG CCACTTGCCA CCCTGTTGCC
121 CCTGTGCCCC TGTGCAGCAT CCATCATTTG GCTCTTGGTT TTTCCATGTT CCCTGTGCCA
181 ATAACGCATT TGTGTCCTGT AACCATAGGC TCGGTCCTGT ATATTGTTTG TGAGTAACCA
241 TGTAACCAAT TAAAGGGCCT TCCACCGCCC ATGTTCATTC CTCCTGTTTG AACCCCTCCA
301 AATATATTAA TACCGAAGGT ACAAATATCT CAACGCCAAA AAAAAAAAAA AA
Predicted gene structure (within gDNA segment 19578 to 18483):
Exon 1 19237 18937 ( 301 n); cDNA 1 335 ( 335 n); score: 0.731
PPA cDNA 338 352
MATCH AP005199- 18387762+ 0.731 301 0.855 C
PGS_AP005199-_18387762+ (19237 18937)
Alignment (genomic DNA sequence = upper lines):
CAAAGGGAT- CAAGTTGAAC AACGTC-AAG CTTCTCATGC GCTTCGAGTT TGAATGA--C 19182
||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||| |
CAAAGGGATC CAAGTTGAAC AACGTCCAAG CTTCTCATGC GCTTCGAGTT TGAATGACCC 60
CCAACA-CA- CCGACA-CTT TCTTTCTTTC TCGCCGCATC GCA-TTG-CA --CTG-TG-C 19131
|||||| || |||||| ||| |||||| | |||| | | || ||| || ||| || |
CCAACACCAC CCGACACCTT TCTTTCCTCG CCGCCACTTG CCACTTGCCA CCCTGTTGCC 120
-CTGTG--CT TGTGCAGCAT CCATCATTTG G-T-TTGGTT TTT-CATGTT -CCTGTG-C- 19080
||||| | |||||||||| |||||||||| | | |||||| ||| |||||| |||||| |
CCTGTGCCCC TGTGCAGCAT CCATCATTTG GCTCTTGGTT TTTCCATGTT CCCTGTGCCA 180
AT-ACGCATT TGTGT-CTGT -A-CATAGGC TCGGTCCTGT ATATTGTTTG TGAGTAA-CA 19025
|| ||||||| ||||| |||| | ||||||| |||||||||| |||||||||| ||||||| ||
ATAACGCATT TGTGTCCTGT AACCATAGGC TCGGTCCTGT ATATTGTTTG TGAGTAACCA 240
TGTAA-TAA- T-AA-GG-CT T-CA-CG-CC ATGTTCATTC CTCCTGTTTG AACCCCTCCA 18973
||||| || | || || || | || || || |||||||||| |||||||||| ||||||||||
TGTAACCAAT TAAAGGGCCT TCCACCGCCC ATGTTCATTC CTCCTGTTTG AACCCCTCCA 300
AATATATTAA TACCGAAGGT ACAAAATATC TCAACG 18937
|||||||||| |||||||||| || ||||||| ||||||
AATATATTAA TACCGAAGGT AC-AAATATC TCAACG 335
hqPGS_AP005199-_18387762+ (19237 18937)
<A NAME="PGS11@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 11 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=22305071" TARGET="NUCLEOTIDE SEQUENCE SEARCH">22305071+</A>)
1 GACCGCAAAG GGATCAAGTT GAACAACGTC AAGCTTCTCA TGCGCTTCGA GTTTGAATGA
61 CCCAACACAC CGACACTTTC TTTCTCGCCG CATTGCATTG CACTGTGCCT GTGCCTGTGC
121 AGCATCCATC ATTTGGTTTG GTTTTTCATG TTCCTGTGCA TACGCATTTG TGTCTGTACA
181 TAGGCTCGGT CCTGTATATT GTTTGTGAGT AACATGTAAC ATAAGGCTTC ACGCCATGTT
241 CATTCCTCCT GTTTGAACCC CTCCCAATAT ATTAATACCG AAGGTACAAA TAAAAAAAAA
301 AAAAAAA
Predicted gene structure (within gDNA segment 19542 to 18558):
Exon 1 19242 18948 ( 295 n); cDNA 1 290 ( 290 n); score: 0.969
PPA cDNA 292 307
MATCH AP005199- 22305071+ 0.969 295 0.961 C
PGS_AP005199-_22305071+ (19242 18948)
Alignment (genomic DNA sequence = upper lines):
GACCGCAAAG GGATCAAGTT GAACAACGTC AAGCTTCTCA TGCGCTTCGA GTTTGAATGA 19183
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GACCGCAAAG GGATCAAGTT GAACAACGTC AAGCTTCTCA TGCGCTTCGA GTTTGAATGA 60
CCCAACACAC CGACACTTTC TTTCTTTCTC GCCGCATCGC ATTGCACTGT GCCTGTGCTT 19123
|||||||||| |||||||||| | ||||| ||||||| || |||||||||| |||||||| |
CCCAACACAC CGACACTTTC --T--TTCTC GCCGCATTGC ATTGCACTGT GCCTGTGCCT 116
GTGCAGCATC CATCATTTGG TTTGGTTTTT CATGTTCCTG TGCATACGCA TTTGTGTCTG 19063
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGCAGCATC CATCATTTGG TTTGGTTTTT CATGTTCCTG TGCATACGCA TTTGTGTCTG 176
TACATAGGCT CGGTCCTGTA TATTGTTTGT GAGTAACATG TAATAATAAG GCTTCACGCC 19003
|||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| ||||||||||
TACATAGGCT CGGTCCTGTA TATTGTTTGT GAGTAACATG TAA-CATAAG GCTTCACGCC 235
ATGTTCATTC CTCCTGTTTG AACCCCTCCA AATATATTAA TACCGAAGGT ACAAA 18948
|||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||
ATGTTCATTC CTCCTGTTTG AACCCCTCCC AATATATTAA TACCGAAGGT ACAAA 290
hqPGS_AP005199-_22305071+ (19242 18948)
<A NAME="PGS4@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 4 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29633048" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29633048-</A>)
1 TGCACGGGTA CGTACGTGGA TTGAATTTCA TACCGAAAAC GGTTCGCTAC TCCAAGTTGA
61 TGTGATATTA TGGAGGTGAC GATGGAAAAT GGACTTGTGA TGGGATGATG GATAGGTGGG
121 GATAGCGGGA GTACCAGCGG ACTCGGTGAT GAAGAGAACG AGGGCGATAG AGGATAACTG
181 GGTGCCGGTG TGGGAGGAGG ATTTCACCTT CAAACTGACC GTGCCGGAGA TCGCGTTGCT
241 GCGGGTGGAG GTGCACGAGT ACGACATGTC GGAGAAGGAC GACTTCGGCG GCCAGACGGT
301 GCTGCCGGTG TCGGATCTCA TCCCGGGGAT CCGAGCGGTG GCACTCCACG ACCGCAAAGG
361 GATCAAGTTG AACAACGTCA AGCTTCTCAT GCGCTTCGAG TTTGAATGAC CCAACACACC
421 GACACTTTCT TTCTTTCTCG CCGCATCGCA TTGCACTGTG CCTGTGCTTG TGCAGCATCC
481 ATCATTTGGT TTGGTTTTTC ATGTTCCTGT GCATACGCAT TTGTGTCTGT ACATAGGCTC
541 GGTCCTGTAT ATTGTTTGTG AGTAACATGT AATAATAAGG CTTAAAGCCA TGTTCATTC
Predicted gene structure (within gDNA segment 19896 to 18693):
Exon 1 19591 18993 ( 599 n); cDNA 1 599 ( 599 n); score: 0.997
MATCH AP005199- 29633048- 0.997 599 1.000 C
PGS_AP005199-_29633048- (19591 18993)
Alignment (genomic DNA sequence = upper lines):
TGCACGGGTA CGTACGTGGA TTGAATTTCA TACCGAAAAC GGTTCGCTAC TCCAAGTTGA 19532
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGCACGGGTA CGTACGTGGA TTGAATTTCA TACCGAAAAC GGTTCGCTAC TCCAAGTTGA 60
TGTGATATTA TGGAGGTGAC GATGGAAAAT GGACTTGTGA TGGGATGATG GATAGGTGGG 19472
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGTGATATTA TGGAGGTGAC GATGGAAAAT GGACTTGTGA TGGGATGATG GATAGGTGGG 120
GATAGCGGGA GTACCAGCGG ACTCGGTGAT GAAGAGAACG AGGGCGATAG AGGATAACTG 19412
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATAGCGGGA GTACCAGCGG ACTCGGTGAT GAAGAGAACG AGGGCGATAG AGGATAACTG 180
GGTGCCGGTG TGGGAGGAGG ATTTCACCTT CAAACTGACC GTGCCGGAGA TCGCGTTGCT 19352
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGTGCCGGTG TGGGAGGAGG ATTTCACCTT CAAACTGACC GTGCCGGAGA TCGCGTTGCT 240
GCGGGTGGAG GTGCACGAGT ACGACATGTC GGAGAAGGAC GACTTCGGCG GCCAGACGGT 19292
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCGGGTGGAG GTGCACGAGT ACGACATGTC GGAGAAGGAC GACTTCGGCG GCCAGACGGT 300
GCTGCCGGTG TCGGATCTCA TCCCGGGGAT CCGAGCGGTG GCACTCCACG ACCGCAAAGG 19232
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GCTGCCGGTG TCGGATCTCA TCCCGGGGAT CCGAGCGGTG GCACTCCACG ACCGCAAAGG 360
GATCAAGTTG AACAACGTCA AGCTTCTCAT GCGCTTCGAG TTTGAATGAC CCAACACACC 19172
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATCAAGTTG AACAACGTCA AGCTTCTCAT GCGCTTCGAG TTTGAATGAC CCAACACACC 420
GACACTTTCT TTCTTTCTCG CCGCATCGCA TTGCACTGTG CCTGTGCTTG TGCAGCATCC 19112
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GACACTTTCT TTCTTTCTCG CCGCATCGCA TTGCACTGTG CCTGTGCTTG TGCAGCATCC 480
ATCATTTGGT TTGGTTTTTC ATGTTCCTGT GCATACGCAT TTGTGTCTGT ACATAGGCTC 19052
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATCATTTGGT TTGGTTTTTC ATGTTCCTGT GCATACGCAT TTGTGTCTGT ACATAGGCTC 540
GGTCCTGTAT ATTGTTTGTG AGTAACATGT AATAATAAGG CTTCACGCCA TGTTCATTC 18993
|||||||||| |||||||||| |||||||||| |||||||||| ||| | |||| |||||||||
GGTCCTGTAT ATTGTTTGTG AGTAACATGT AATAATAAGG CTTAAAGCCA TGTTCATTC 599
hqPGS_AP005199-_29633048- (19591 18993)
<A NAME="PGS6@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 6 -strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29622760" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29622760-</A>)
1 CGGTGATGAA GAGAACGAGG GCGATAGAGG ATAACTGGGT GCCGGTGTGG GAGGAGGATT
61 TCACCTTCAA ACTGACCGTG CCGGAGATCG CGTTGCTGCG GGTGGAGGTG CACGAGTACG
121 ACATGTCGGA GAAGGACGAC TTCGGCGGCC AGACGGTGCT GCCGGTGTCG GAGCTCATCC
181 CGGGGATCCG AGCGGTGGCA CTCCACGACC GCAAAGGGAT CAAGTTGAAC AACGTCAAGC
241 TTCTCATGCG CTTCGAGTTT GAATGACCCA ACACACCGAC ACTTTCTTTC TCGCCGCATT
301 GCATTGCACT GTGCCTGTGC CTGTGCAGCA TCCATCATTT GGTTTGGTTT TTCATGTTCC
361 TGTGCATACG CATTTGTGTC TGTACATAGG CTCGGTCCTG TATATTGTTT GTGAGTAACA
421 TGTAACAATA AGGCTTCACG CCCATGTTC
Predicted gene structure (within gDNA segment 19753 to 18668):
Exon 1 19448 18997 ( 452 n); cDNA 1 449 ( 449 n); score: 0.978
MATCH AP005199- 29622760- 0.978 452 1.007 C
PGS_AP005199-_29622760- (19448 18997)
Alignment (genomic DNA sequence = upper lines):
CGGTGATGAA GAGAACGAGG GCGATAGAGG ATAACTGGGT GCCGGTGTGG GAGGAGGATT 19389
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGTGATGAA GAGAACGAGG GCGATAGAGG ATAACTGGGT GCCGGTGTGG GAGGAGGATT 60
TCACCTTCAA ACTGACCGTG CCGGAGATCG CGTTGCTGCG GGTGGAGGTG CACGAGTACG 19329
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCACCTTCAA ACTGACCGTG CCGGAGATCG CGTTGCTGCG GGTGGAGGTG CACGAGTACG 120
ACATGTCGGA GAAGGACGAC TTCGGCGGCC AGACGGTGCT GCCGGTGTCG GATCTCATCC 19269
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || |||||||
ACATGTCGGA GAAGGACGAC TTCGGCGGCC AGACGGTGCT GCCGGTGTCG GAGCTCATCC 180
CGGGGATCCG AGCGGTGGCA CTCCACGACC GCAAAGGGAT CAAGTTGAAC AACGTCAAGC 19209
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGGGATCCG AGCGGTGGCA CTCCACGACC GCAAAGGGAT CAAGTTGAAC AACGTCAAGC 240
TTCTCATGCG CTTCGAGTTT GAATGACCCA ACACACCGAC ACTTTCTTTC TTTCTCGCCG 19149
|||||||||| |||||||||| |||||||||| |||||||||| | ||||| ||||||||||
TTCTCATGCG CTTCGAGTTT GAATGACCCA ACACACCGAC A----CTTTC TTTCTCGCCG 296
CATCGCATTG CACTGTGCCT GTGCTTGTGC AGCATCCATC ATTTGGTTTG GTTTTTCATG 19089
||| |||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||||
CATTGCATTG CACTGTGCCT GTGCCTGTGC AGCATCCATC ATTTGGTTTG GTTTTTCATG 356
TTCCTGTGCA TACGCATTTG TGTCTGTACA TAGGCTCGGT CCTGTATATT GTTTGTGAGT 19029
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTCCTGTGCA TACGCATTTG TGTCTGTACA TAGGCTCGGT CCTGTATATT GTTTGTGAGT 416
AACATGTAAT AATAAGGCTT CACG-CCATG TTC 18997
||||||||| |||||||||| |||| ||||| |||
AACATGTAAC AATAAGGCTT CACGCCCATG TTC 449
hqPGS_AP005199-_29622760- (19448 18997)
<A NAME="PGS18@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 18 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29680389" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29680389+</A>)
1 CAGATCCGGC AGCCTTTTGG GCGCGGCGGG CGCATCCCGC GGGTGGGGCG GGCACTCCCA
61 CTCCTGACGG TGGACGACTT CCACCGATTC CTCTTCTCCC ACGAGCTGAA CCCACCCATC
121 CGGCACGGGC AGGGGCAGGT GCACCACGAC ATGGCCGCCC CGCTCTCCCA CTACTTCATC
181 TACACCGGCC ACAACTCCTA CCTCACCGGC AACCAGCTCA GCAGCGACTG CAGCGACCTC
241 CCCATCATCA GGGCTCTCCA GAGGGGCGTC CGCGTCATCG AGCTCGACAT GTGGCCCAAC
301 TCCTCCAAGG ATGACATCAG CATCCTCCAT GGCAGGACGC TCACCACCCC GGTCTCCCTC
361 CTCAAATGCC TCCTCTCCAT CAAGCAACAC GCCTTTGAGG CCTCCCCTTA CCCGGTTATC
421 ATCACGCTCG AAGACCACCT CACCCCCGAT CTCCAGGACA AAGCAGCCAA GATGGTTCTT
481 GAAGTTTTCG GCGACATCCT CTACTACCCT GACAAAGATC ACCTCAAAGA GTTCCCTTCG
541 CCTCAAGACC TCAAGGGCCG TGTCCTCCTC TCCACCAAGC CCCCCAGGGA GTACCTTCAA
601 GCCAAGGATG GTAATGCTGC CACCATCAAA GAGGACGCCA AGGCCGCCGC CACTGACGAT
661 GCCGCATGGG GAAAAGAAGT CCCAGATATT CACTCTCAAA TCCACTCTGC CACTAAACAT
721 GACCACAGAG AAGATGACGA CGACACCGAT
Predicted gene structure (within gDNA segment 21861 to 20350):
Exon 1 21561 21091 ( 471 n); cDNA 1 471 ( 471 n); score: 0.989
Intron 1 21090 21029 ( 62 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 2 21028 20783 ( 246 n); cDNA 472 717 ( 246 n); score: 1.000
Intron 2 20782 20688 ( 95 n); Pd: 0.994 (s: 1.00), Pa: 0.861 (s: 0)
Exon 3 20687 20655 ( 33 n); cDNA 718 750 ( 33 n); score: 0.970
MATCH AP005199- 29680389+ 0.993 750 1.000 C
PGS_AP005199-_29680389+ (21561 21091,21028 20783,20687 20655)
Alignment (genomic DNA sequence = upper lines):
CAGATCCGGC AGCTGCAGGG GCGCGGCGGG CGCATCCCGC GGGTGGGGCG GGCACTCCCA 21502
|||||||||| ||| || |||||||||| |||||||||| |||||||||| ||||||||||
CAGATCCGGC AGCCTTTTGG GCGCGGCGGG CGCATCCCGC GGGTGGGGCG GGCACTCCCA 60
CTCCTGACGG TGGACGACTT CCACCGATTC CTCTTCTCCC ACGAGCTGAA CCCACCCATC 21442
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCCTGACGG TGGACGACTT CCACCGATTC CTCTTCTCCC ACGAGCTGAA CCCACCCATC 120
CGGCACGGGC AGGGGCAGGT GCACCACGAC ATGGCCGCCC CGCTCTCCCA CTACTTCATC 21382
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGGCACGGGC AGGGGCAGGT GCACCACGAC ATGGCCGCCC CGCTCTCCCA CTACTTCATC 180
TACACCGGCC ACAACTCCTA CCTCACCGGC AACCAGCTCA GCAGCGACTG CAGCGACCTC 21322
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TACACCGGCC ACAACTCCTA CCTCACCGGC AACCAGCTCA GCAGCGACTG CAGCGACCTC 240
CCCATCATCA GGGCTCTCCA GAGGGGCGTC CGCGTCATCG AGCTCGACAT GTGGCCCAAC 21262
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCCATCATCA GGGCTCTCCA GAGGGGCGTC CGCGTCATCG AGCTCGACAT GTGGCCCAAC 300
TCCTCCAAGG ATGACATCAG CATCCTCCAT GGCAGGACGC TCACCACCCC GGTCTCCCTC 21202
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TCCTCCAAGG ATGACATCAG CATCCTCCAT GGCAGGACGC TCACCACCCC GGTCTCCCTC 360
CTCAAATGCC TCCTCTCCAT CAAGCAACAC GCCTTTGAGG CCTCCCCTTA CCCGGTTATC 21142
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCAAATGCC TCCTCTCCAT CAAGCAACAC GCCTTTGAGG CCTCCCCTTA CCCGGTTATC 420
ATCACGCTCG AAGACCACCT CACCCCCGAT CTCCAGGACA AAGCAGCCAA GGTATATATA 21082
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |
ATCACGCTCG AAGACCACCT CACCCCCGAT CTCCAGGACA AAGCAGCCAA G......... 471
ATCTTCTTCT TCTCTCTGTC TCTGCCTTGC TCGCTCACTT GCCAATGGGC CAGATGGTTC 21022
|||||||
.......... .......... .......... .......... .......... ...ATGGTTC 478
TTGAAGTTTT CGGCGACATC CTCTACTACC CTGACAAAGA TCACCTCAAA GAGTTCCCTT 20962
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TTGAAGTTTT CGGCGACATC CTCTACTACC CTGACAAAGA TCACCTCAAA GAGTTCCCTT 538
CGCCTCAAGA CCTCAAGGGC CGTGTCCTCC TCTCCACCAA GCCCCCCAGG GAGTACCTTC 20902
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CGCCTCAAGA CCTCAAGGGC CGTGTCCTCC TCTCCACCAA GCCCCCCAGG GAGTACCTTC 598
AAGCCAAGGA TGGTAATGCT GCCACCATCA AAGAGGACGC CAAGGCCGCC GCCACTGACG 20842
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AAGCCAAGGA TGGTAATGCT GCCACCATCA AAGAGGACGC CAAGGCCGCC GCCACTGACG 658
ATGCCGCATG GGGAAAAGAA GTCCCAGATA TTCACTCTCA AATCCACTCT GCCACTAAAG 20782
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||
ATGCCGCATG GGGAAAAGAA GTCCCAGATA TTCACTCTCA AATCCACTCT GCCACTAAA. 717
TACTCCTCAT ATTACTAGCT TCTTCTTCTT CTTCTTATGC TCATAGTAGA GCCAGTTTCT 20722
.......... .......... .......... .......... .......... .......... 717
TACCTGCAGG GCACACTTTT GTTTCATTCT GCAGCATGAC CAAAGAGAAG ATGACGACGA 20662
|||||| || ||||||| ||||||||||
.......... .......... .......... ....CATGAC CACAGAGAAG ATGACGACGA 743
CACCGAT 20655
|||||||
CACCGAT 750
hqPGS_AP005199-_29680389+ (21561 21091,21028 20783,20687 20655)
<A NAME="PGS19@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 19 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=25800312" TARGET="NUCLEOTIDE SEQUENCE SEARCH">25800312+</A>)
1 GTGGACGACT TCCACCGATT CCTCTTCTCC CACGAGCTGA ACCCACCCAT CCGGCACGGG
61 CAGGGGCAGG TGCACCACGA CATGGCCGCC CCGCTCTCCC ACTACTTCAT CTACACCGGC
121 CACAACTCCT ACCTCACCGG CAACCAGCTC AGCAGCGACT GCAGCGACCT CCCCATCATC
181 AGGGCTCTCC AGAGGGGCGT CCGCGTCATC GAGCTCGACA TGTGGCCCAA CTCCTCCAAG
241 GATGACATCA GCATCCTCCA TGGCAGGACG CTCACCACCC CGGTCTCCCT CCTCAAATGC
301 CTCCTCTCCA TCAAGCAACA CGCCTTTGAG GCCTCCCCTT ACCCGGTTAT CATCACGCTC
361 GAAGACCACC TCACCCCCGA TCTCCAGGAC AAAGCAGCCA AGATGGTTCT TGAAGTTTTC
421 GGCGACATCC TCTACTACCC TGACAAAGAT CACCTCANAG AGTTCCCTTC GCCTCAAGAC
481 CTCAAGGGCC GTGTCCTCCT CTCCACCAAG CCCCCCAGGG AGTACCTTCA AGCCAAGGAT
541 GGTAATGCTG CCACCATCAN AGAGGACGCC NAGGCCGCCG CCACTGACGA TGCCGCATGG
601 GGGAAAAGAA TCCCAGA
Predicted gene structure (within gDNA segment 21792 to 20449):
Exon 1 21492 21091 ( 402 n); cDNA 1 402 ( 402 n); score: 1.000
Intron 1 21090 21029 ( 62 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 1.00)
Exon 2 21028 20814 ( 215 n); cDNA 403 617 ( 215 n); score: 0.967
MATCH AP005199- 25800312+ 0.989 617 1.000 C
PGS_AP005199-_25800312+ (21492 21091,21028 20814)
Alignment (genomic DNA sequence = upper lines):
GTGGACGACT TCCACCGATT CCTCTTCTCC CACGAGCTGA ACCCACCCAT CCGGCACGGG 21433
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GTGGACGACT TCCACCGATT CCTCTTCTCC CACGAGCTGA ACCCACCCAT CCGGCACGGG 60
CAGGGGCAGG TGCACCACGA CATGGCCGCC CCGCTCTCCC ACTACTTCAT CTACACCGGC 21373
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CAGGGGCAGG TGCACCACGA CATGGCCGCC CCGCTCTCCC ACTACTTCAT CTACACCGGC 120
CACAACTCCT ACCTCACCGG CAACCAGCTC AGCAGCGACT GCAGCGACCT CCCCATCATC 21313
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CACAACTCCT ACCTCACCGG CAACCAGCTC AGCAGCGACT GCAGCGACCT CCCCATCATC 180
AGGGCTCTCC AGAGGGGCGT CCGCGTCATC GAGCTCGACA TGTGGCCCAA CTCCTCCAAG 21253
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
AGGGCTCTCC AGAGGGGCGT CCGCGTCATC GAGCTCGACA TGTGGCCCAA CTCCTCCAAG 240
GATGACATCA GCATCCTCCA TGGCAGGACG CTCACCACCC CGGTCTCCCT CCTCAAATGC 21193
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GATGACATCA GCATCCTCCA TGGCAGGACG CTCACCACCC CGGTCTCCCT CCTCAAATGC 300
CTCCTCTCCA TCAAGCAACA CGCCTTTGAG GCCTCCCCTT ACCCGGTTAT CATCACGCTC 21133
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CTCCTCTCCA TCAAGCAACA CGCCTTTGAG GCCTCCCCTT ACCCGGTTAT CATCACGCTC 360
GAAGACCACC TCACCCCCGA TCTCCAGGAC AAAGCAGCCA AGGTATATAT AATCTTCTTC 21073
|||||||||| |||||||||| |||||||||| |||||||||| ||
GAAGACCACC TCACCCCCGA TCTCCAGGAC AAAGCAGCCA AG........ .......... 402
TTCTCTCTGT CTCTGCCTTG CTCGCTCACT TGCCAATGGG CCAGATGGTT CTTGAAGTTT 21013
|||||| ||||||||||
.......... .......... .......... .......... ....ATGGTT CTTGAAGTTT 418
TCGGCGACAT CCTCTACTAC CCTGACAAAG ATCACCTCAA AGAGTTCCCT TCGCCTCAAG 20953
|||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||||||||
TCGGCGACAT CCTCTACTAC CCTGACAAAG ATCACCTCAN AGAGTTCCCT TCGCCTCAAG 478
ACCTCAAGGG CCGTGTCCTC CTCTCCACCA AGCCCCCCAG GGAGTACCTT CAAGCCAAGG 20893
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ACCTCAAGGG CCGTGTCCTC CTCTCCACCA AGCCCCCCAG GGAGTACCTT CAAGCCAAGG 538
ATGGTAATGC TGCCACCATC AAAGAGGACG CCAAGGCCGC CGCCACTGAC GATGCCGCAT 20833
|||||||||| |||||||||| | |||||||| || ||||||| |||||||||| ||||||||||
ATGGTAATGC TGCCACCATC ANAGAGGACG CCNAGGCCGC CGCCACTGAC GATGCCGCAT 598
GGGGAAAAGA AGTCCCAGA 20814
|||| ||| | |||||||
GGGGGAAAAG AATCCCAGA 617
hqPGS_AP005199-_25800312+ (21492 21091,21028 20814)
<A NAME="PGS20@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 20 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29633588" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29633588+</A>)
1 TGTCCGCGCC CTCTTCGCCA ACCACTCCGC CGGCGGTGGC CCCCACATGG CCGCCGACGG
61 CCTCCGCGCC TACCTCCAGG CCACCGGCCA GGACGGCGAC GTGGACATGG AGCGGCTGGT
121 GGAGCAGATC CGGCAGCTGC AGGGGCGCGG CGGGCGCATC CCGCGGGTGG GGCGGGCACT
181 CCCACTCCTG ACGGTGGACG ACTTCCACCG ATTCCTCTTC TCCCACGAGC TGAACCCACC
241 CATCCGGCAC GGGCAGGGGC AGGTGCACCA CGACATGGCC GCCCCGCTCT CCCACTACTT
301 CATCTACACC GGCCACAACT CCTACCTCAC CGGCAACCAG CTCAGCAGCG ACTGCAGCGA
361 CCTCCCCATC ATCAGGGCTC TCCAGAGGGG CGTCCGCGTC ATCGAGCTCG ACATGTGGCC
421 CAACTCCTCC AAGGATGACA TCAGCATCCT CCATGGCAGG ACGCTCACCA CCCCGGTCTC
481 CCTCCTCAAA TGCCTCCTCT CCATCAAGCA ACACGCCTTT GAGGCCTCCC CTTACCCGGT
541 TATCATCACG CTCGAAGACC ACCTCACCCC CGATCTCCAG GACAAAGCAG CCAAGATGGT
601 TCTTGAAG
Predicted gene structure (within gDNA segment 21985 to 20711):
Exon 1 21685 21091 ( 595 n); cDNA 1 595 ( 595 n); score: 1.000
Intron 1 21090 21029 ( 62 n); Pd: 0.999 (s: 1.00), Pa: 0.000 (s: 0)
Exon 2 21028 21016 ( 13 n); cDNA 596 608 ( 13 n); score: 1.000
MATCH AP005199- 29633588+ 1.000 608 1.000 C
PGS_AP005199-_29633588+ (21685 21091,21028 21016)
Alignment (genomic DNA sequence = upper lines):
TGTCCGCGCC CTCTTCGCCA ACCACTCCGC CGGCGGTGGC CCCCACATGG CCGCCGACGG 21626
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
TGTCCGCGCC CTCTTCGCCA ACCACTCCGC CGGCGGTGGC CCCCACATGG CCGCCGACGG 60
CCTCCGCGCC TACCTCCAGG CCACCGGCCA GGACGGCGAC GTGGACATGG AGCGGCTGGT 21566
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCTCCGCGCC TACCTCCAGG CCACCGGCCA GGACGGCGAC GTGGACATGG AGCGGCTGGT 120
GGAGCAGATC CGGCAGCTGC AGGGGCGCGG CGGGCGCATC CCGCGGGTGG GGCGGGCACT 21506
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GGAGCAGATC CGGCAGCTGC AGGGGCGCGG CGGGCGCATC CCGCGGGTGG GGCGGGCACT 180
CCCACTCCTG ACGGTGGACG ACTTCCACCG ATTCCTCTTC TCCCACGAGC TGAACCCACC 21446
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCCACTCCTG ACGGTGGACG ACTTCCACCG ATTCCTCTTC TCCCACGAGC TGAACCCACC 240
CATCCGGCAC GGGCAGGGGC AGGTGCACCA CGACATGGCC GCCCCGCTCT CCCACTACTT 21386
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CATCCGGCAC GGGCAGGGGC AGGTGCACCA CGACATGGCC GCCCCGCTCT CCCACTACTT 300
CATCTACACC GGCCACAACT CCTACCTCAC CGGCAACCAG CTCAGCAGCG ACTGCAGCGA 21326
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CATCTACACC GGCCACAACT CCTACCTCAC CGGCAACCAG CTCAGCAGCG ACTGCAGCGA 360
CCTCCCCATC ATCAGGGCTC TCCAGAGGGG CGTCCGCGTC ATCGAGCTCG ACATGTGGCC 21266
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCTCCCCATC ATCAGGGCTC TCCAGAGGGG CGTCCGCGTC ATCGAGCTCG ACATGTGGCC 420
CAACTCCTCC AAGGATGACA TCAGCATCCT CCATGGCAGG ACGCTCACCA CCCCGGTCTC 21206
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CAACTCCTCC AAGGATGACA TCAGCATCCT CCATGGCAGG ACGCTCACCA CCCCGGTCTC 480
CCTCCTCAAA TGCCTCCTCT CCATCAAGCA ACACGCCTTT GAGGCCTCCC CTTACCCGGT 21146
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
CCTCCTCAAA TGCCTCCTCT CCATCAAGCA ACACGCCTTT GAGGCCTCCC CTTACCCGGT 540
TATCATCACG CTCGAAGACC ACCTCACCCC CGATCTCCAG GACAAAGCAG CCAAGGTATA 21086
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||
TATCATCACG CTCGAAGACC ACCTCACCCC CGATCTCCAG GACAAAGCAG CCAAG..... 595
TATAATCTTC TTCTTCTCTC TGTCTCTGCC TTGCTCGCTC ACTTGCCAAT GGGCCAGATG 21026
|||
.......... .......... .......... .......... .......... .......ATG 598
GTTCTTGAAG 21016
||||||||||
GTTCTTGAAG 608
hqPGS_AP005199-_29633588+ (21685 21091)
<A NAME="PGS21@AP005199-18000-22999"></A>
********************************************************************************
<A HREF="#HEAD-PGL-AP005199-18000-22999">Scroll down to "Predicted gene locations"</A>
EST sequence 21 +strand (File: <A HREF="http://www.plantgdb.org/data.php?Seq_ID=29622759" TARGET="NUCLEOTIDE SEQUENCE SEARCH">29622759+</A>)
1 TGATGATGAG CTGATTCGCA TAATTCTAAT TCCAATTCCA ATTATAATTC CAAGAGGCTC
61 ATCATCAACT CAACTGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAGGA GGAGGGTTGT
121 GAACTGATTT GGGAAGGGAG GGGGAGGAGG AAGGCGATCG ATCGGCGATG GGCACGTACA
181 AGTGCTGCCT CATCTTCAAG CGCCGCTTCC GCTGGAACGA CGCGCCGCCG CCCGACGATG
241 TCCGCGCCCT CTTCGCCAAC CACTCCGCCG GCGGTGGCCC CCACATGGCC GCCGACGGCC
301 TCCGCGCCTA CCTCCAGGCC ACCGGCCAGG ACGGCGACGT GGACATGGAG CGGCTGGTGG
361 AGCAGATCCG GCAGCTGCAG GGGCGCGGCG GGCGCATCCC GCGGGTGGGG CGGGCACTCC
421 CACTCCTGAC GGTGGACGAC TTCCACCGAT TCCTCTTCTC CCACGAGCTG AACCCACCCA
481 TCCGGCACGG GCAGGGGCAG GTGCACCACG ACATGGCCGC CCCGCTCTCC CACTACTTCA
541 TCTACACCGG CCACAACTCC TACCTCACCG GCAACCAGCT CAGCAGCGAC TGCAGCGACC
601 TCCCCATCAT CAGGGCTCTC CAGAGGGGCG TCCGCGTCAT CGAGCTCGAC ATGTGGCCCA
661 ACTCCTCCAA GGATGACATC AGCATCCTCC ATGGCAGGAC GCTCACCACC CCGGTCTCCC
721 TCCTCAAATG CCTCCTCTCC ATCAAGAAAC ACGCCTTTGA AGCCTCCCCT TACCCGGTTA
781 TCATCACGCT CGAAGACCAC CTCACCCCCG ATCTCCAGGA CAAAG
Predicted gene structure (within gDNA segment 22223 to 20794):
Exon 1 21923 21099 ( 825 n); cDNA 1 825 ( 825 n); score: 0.995
MATCH AP005199- 29622759+ 0.995 825 1.000 C
PGS_AP005199-_29622759+ (21923 21099)
Alignment (genomic DNA sequence = upper lines):
TGATGATGAG CTGATTCGCA TAATTCCAAT TCCAATTCCA ATTATAATTC CAAGAGGCTT 21864
|||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||
TGATGATGAG CTGATTCGCA TAATTCTAAT TCCAATTCCA ATTATAATTC CAAGAGGCTC 60
ATCATCAACT CAACTGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAGGA GGAGGGTTGT 21804
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
ATCATCAACT CAACTGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAGGA GGAGGGTTGT 120
GAACTGATTT GGGAAGGGAG GGGGAGGAGG AAGGCGATCG ATCGGCGATG GGCACGTACA 21744
|||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||||
GAAC