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site_map.php from eXtensible Genome Data Broker at Krugle


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<?php
if(empty($SITEDEF_H)){require('SITEDEF.php');}
if(empty($PARAM_H)){require('getPARAM.php');}
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/TWO_COLUMN_HEADER/" . $SSI_QUERYSTRING);
?>

<div ID="mainWLS" align="center">
<P align="left"><font size=5 color="#000000"><b><?php echo $SITENAMEshort; ?> Site Map</b></font></P>
<P align="left">This is the information distribution site for <?php echo $SITENAMEshort; ?> (<?php echo $LATINORGN; ?> DataBase). Clicking on the links found on the left will lead you to pages which allow you to access the database and learn more about our work. The controls at the top of the page will allow you to jump to a more specific location in the database. More detailed information on these links and controls can be found below.</P><BR>

<P align="left"><font size=5 color="#5F5F5F"><B>Links:</B></font></P>
<P align="left"><A href="<?php echo $GDBDIR; ?>"><?php echo $SITENAMEshort; ?> Home</A>:<BR>This is the entry point to the database. This page gives a general description of the motivation for developing <?php echo $SITENAMEshort; ?>, and is also the portal for announcements as to improvements and extensions of <?php echo $SITENAMEshort; ?>.</P>
<P align="left"><A href='<?php echo "${GDBDIR}tutorial/index.html"; ?>'>Search <?php echo $SITENAMEshort; ?></A>:<BR>This webpage gives examples of the search capabilities of <?php echo $SITENAMEshort; ?> and instruction as to the use of the search control found at the top of each <?php echo $SITENAMEshort; ?> webpage.</P>
<P align="left"><A href='<?php echo "${CGIPATH}blastGDB.pl"; ?>'><?php echo $SITENAMEshort; ?> Blast</A>:<BR>This application interface allows you to (PRIVATELY) integrate your own data with that of the database through analysis with the BLAST suite of local alignment programs. For more detailed information look <A href='<?php echo "${GDBDIR}tutorial/index.html"; ?>'>here</A>.</P>
<P align="left"><A href="<?php echo $GSQwebpath; ?>"><?php echo $SITENAMEshort; ?> GeneSeqer</A>:<BR>This application interface allows you to (PRIVATELY) integrate your own data with that of the database through analysis with the GeneSeqer spliced alignment program. For more detailed information look <A href='<?php echo "${GDBDIR}tutorial/index.html"; ?>'>here</A>.</P>
<P align="left"><A href="#">Site Description</A>:<BR>You're reading it!!</P>
<P align="left"><A href='<?php echo "${GDBDIR}tutorial/index.html"; ?>'>Tour/Tutorial</A>:<BR>This webpage offers a more detailed look at the functionalities of the <?php echo $SITENAMEshort; ?> database. Here we present a step-by-step account of the intended and alternative uses of <?php echo $SITENAMEshort; ?>.</P>
<BR>
<P align="left"><font size=5 color="#5F5F5F"><B>Controls:</B></font></P>
<P align="left"><font color="#0000FF">Quick Search:</font><BR>This control allows you to query <?php echo $SITENAMEshort; ?>. You may choose to query by sequence ID (in a specific library or in all libraries), annotated description, user description, or using quick search to find as much information as possible. For more detailed instructions as to the use of this control look <A href='<?php echo "${GDBDIR}tutorial/index.html"; ?>'>here</A>.</P>
<P align="left"><font color="#0000FF">Chromosome -- Start -- End
-- Retrieve:</font><BR>This control allows you to jump immediately to a specific chromosomal region. You will then be able to view detailed information about the EST alignments found in that region and all available annotation for the region as well. For more detailed instructions as to the use of this control look <A href='<?php echo "${GDBDIR}tutorial/index.html"; ?>'>here</A>.</P>
</div>

<?php
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/STANDARD_FOOTER/" . $SSI_QUERYSTRING);
?>




See more files for this project here

eXtensible Genome Data Broker

The xGDB project provides scientists with an online portal for the integration of diverse sources of genomic data. Portals allow researchers to effectively target a specific scientific question by customizing their interactions with available data.

Project homepage: http://sourceforge.net/projects/xgdb
Programming language(s): JavaScript,Perl,PHP
License: other

  Annotation/
    Showcase/
      03nov01/
        CDNA.png
        EST.png
        GBK.png
        UCA.png
        description.html
        ruler.png
      04mar11/
        CDNA.png
        EST.png
        GBK.png
        UCA.png
        description.html
        ruler.png
      GeneModelMerge/
        CDNA.png
        EST.png
        GBK.png
        UCA.png
        index.php
        ruler.png
      GeneModelSplit/
        CDNA.png
        EST.png
        GBK.png
        UCA.png
        index.php
        ruler.png
    gaeval/
      examples/
        altspl.png
        amb3.png
        amb5.png
        att.png
        cov0.png
        cov1.png
        cov2.png
        cov3.png
        cov4.png
        fission.png
        fussion.png
        ovext.png
        unext.png
      GLquery.css
      GLquery.js
      cps.php
      fig1.png
      fig2.png
      figa.png
      gaeval_lists.php
      index.php
    ATchr2.aln
    ATchr3.aln
    ATchr5.aln
    UCAlist.php
    index.php
    vector.php
  Interns/
    spring2004/
      Anna_pic.jpg
      DNA Re1.gif
      DNA Re2.gif
      Exampl3.gif
      Exampl4.gif
      Exampl5.gif
      Exampl6.gif
      Exampl7.gif
      Main P1.jpg
      Xin_pic.jpg
      expression.gif
      index.php
      replication.jpg
      transcription.gif
      transcription_mov.gif
      watson.gif
    index.php
  prj/
    BMBR03/
      IMM/
      VAR2/
      greenwhite_paper.gif
      help.html
      index.html
      list
      sm.png
    BXZ03B/
      AraSet/
      OsBAC/
      atac/
      img/
      index.php
      xc
    RHMB05PP/
      figure_S1.jpg
      figure_S1.php
      index.php
      method.php
      table_S1.php
      table_S2.php
      table_S3.php
      table_S4.php
    TBWB04/
      PLC/
      AtOs-Human-PLC-NJtree.pdf
      AtOs-Human-PLC-distances.txt
      AtOs-Human-PLC.aln
      AtOs-Human-PLC.fas
      Plant-Human-PLC-Matching-NJtree.pdf
      Plant-Human-PLC-Matching-distances.txt
      Plant-Human-PLC-Matching.aln
      Plant-Human-PLC-Matching.fas
      Plant-Human-PLC-NJtree.pdf
      Plant-Human-PLC-distances.txt
      Plant-Human-PLC.aln
      Plant-Human-PLC.fas
      index.php
      plc.png
    ZB03NAR/
      U12.php
      U12.png
      U12_at_ax_acc_new.gif
      U12_at_ax_branch_new.gif
      U12_at_ax_donor_new.gif
      U12_gt_ag_acc_new.gif
      U12_gt_ag_branch_new.gif
      U12_gt_ag_donor_new.gif
      U12_splice_signals.php
      index.php
      ins
      multi_align_nhx.html
    ZSB03PP/
      algnmnts/
      alternativeSplicing/
      data/
      img/
      non_canonical/
      novel/
      ESTclustering.php
      downstreamUTRintrons.php
      extendedCoverage.php
      geneAnnotationVScdna.php
      geneAnnotationVSest.php
      index.php
      miniexons.php
      ncSpliceSites.php
      novelGenes.php
      u12Introns.php
      upstreamUTRintrons.php
      virtualNorthern.php
    index.php
  tmp/
  tutorial/
    CHR5_GSQexample/
    HOWTO/
    lesson/
    GSQ_ATGDB.php
    UCA_ATGDB.php
    index.php
    uca_tutorial.1.gif
    uca_tutorial.2.gif
    uca_tutorial.3.gif
    uca_tutorial.4.gif
  GDBstyle.css
  URIservices.php
  download.php
  index.php
  resource.php
  site_map.php