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log4j.properties from Re-searcher at Krugle


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### direct log messages to stdout ###
log4j.appender.stdout=org.apache.log4j.ConsoleAppender
log4j.appender.stdout.Target=System.out
log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
log4j.appender.stdout.layout.ConversionPattern=%d{ISO8601} %5p %c{1}:%L - %m%n

### direct messages to file hibernate.log ###
log4j.appender.hibernatefile=org.apache.log4j.FileAppender
log4j.appender.hibernatefile.File=/var/log/researcher/hibernate.log
log4j.appender.hibernatefile.layout=org.apache.log4j.PatternLayout
log4j.appender.hibernatefile.layout.ConversionPattern=%d{ISO8601} %5p %c{1}:%L - %m%n

log4j.appender.ncbiPeriodicalTf=org.apache.log4j.FileAppender
log4j.appender.ncbiPeriodicalTf.File=/var/log/researcher/ncbiPeriodical.log
log4j.appender.ncbiPeriodicalTf.layout=org.apache.log4j.PatternLayout
log4j.appender.ncbiPeriodicalTf.layout.ConversionPattern=%d{ISO8601} %5p %c{1}:%L - %m%n

log4j.appender.localPeriodicalTf=org.apache.log4j.FileAppender
log4j.appender.localPeriodicalTf.File=/var/log/researcher/localPeriodical.log
log4j.appender.localPeriodicalTf.layout=org.apache.log4j.PatternLayout
log4j.appender.localPeriodicalTf.layout.ConversionPattern=%d{ISO8601} %5p %c{1}:%L - %m%n

log4j.appender.jobsManagerTf=org.apache.log4j.FileAppender
log4j.appender.jobsManagerTf.File=/var/log/researcher/jobsManager.log
log4j.appender.jobsManagerTf.layout=org.apache.log4j.PatternLayout
log4j.appender.jobsManagerTf.layout.ConversionPattern=%d{ISO8601} %5p %c{1}:%L - %m%n

log4j.appender.testTf=org.apache.log4j.FileAppender
log4j.appender.testTf.File=/var/log/researcher/test.log
log4j.appender.testTf.layout=org.apache.log4j.PatternLayout
log4j.appender.testTf.layout.ConversionPattern=%d{ISO8601} %5p %c{1}:%L - %m%n

log4j.rootLogger=info, stdout
log4j.logger.org.hibernate=error, hibernatefile
log4j.logger.ncbiPeriodical=info, ncbiPeriodicalTf
log4j.logger.localPeriodical=info, localPeriodicalTf
log4j.logger.jobsManager=info, jobsManagerTf
log4j.logger.jobsManager=debug, testTf


##log4j.logger.org.hibernate=warn

### log HQL query parser activity
#log4j.logger.org.hibernate.hql.ast.AST=debug

### log just the SQL
##log4j.logger.org.hibernate.SQL=error

### log JDBC bind parameters ###
##log4j.logger.org.hibernate.type=info
#log4j.logger.org.hibernate.type=debug

### log schema export/update ###
##log4j.logger.org.hibernate.tool.hbm2ddl=debug

### log HQL parse trees
#log4j.logger.org.hibernate.hql=debug

### log cache activity ###
#log4j.logger.org.hibernate.cache=debug

### log transaction activity
#log4j.logger.org.hibernate.transaction=debug

### log JDBC resource acquisition
#log4j.logger.org.hibernate.jdbc=debug

### enable the following line if you want to track down connection ###
### leakages when using DriverManagerConnectionProvider ###
#log4j.logger.org.hibernate.connection.DriverManagerConnectionProvider=trace




See more files for this project here

Re-searcher

Re-searcher is the system for recurrent psiblast searches. It enables timely detection of new proteins on the protein sequence databases. Searches can be done on a local server or at NCBI. It has a user-friendly web interface.

Project homepage: http://sourceforge.net/projects/researcher
Programming language(s): Java,XML
License: other

  META-INF/
    hivemodule.xml
    honeymodule.xml
  researcher/
    beans/
      BlastDatabase.java
      BlastQuery.java
      Configuration.java
      FastaSequence.java
      Hit.java
      SecondaryBlastQuery.java
      Subhit.java
      User.java
    blast/
      cmd/
        BlastOutputStyle.java
        PsiBlastCommand.java
        PsiBlastCommandFactory.java
        PsiBlastResult.java
        PsiBlastResultHandler.java
        PsiBlastXmlParseException.java
        PsiBlastXmlParser.java
        PsiblastExecutionException.java
        Tools.java
      exec/
        PsiBlastExecutor.java
        PsiBlastExecutorResult.java
        QBlastExecutor.java
        SshPsiBlastExecutor.java
      periodical/
        HitsCollection.java
        JobsManager.java
        LocalSearchJob.java
        NCBISearchJob.java
      qblast/
        FormParser.java
        Parameter.java
        PsiBlastTextParseException.java
        PsiBlastTextParser.java
        QBlast.java
        QBlastCommand.java
        QBlastCommandFactory.java
        QBlastException.java
        QBlastParser.java
        QBlastPutResult.java
        QBlastSearchException.java
        Tests.java
      BlastTypes.java
      CompositionalAdjustments.java
      SearchLocation.java
    cache/
      Cache.java
    db/
      service/
        ResearcherPersistenceService.java
        ResearcherPersistenceServiceImpl.java
        TransactionalDirectService.java
      GlobalDAO.java
      HibernateUtil.java
    exceptions/
      AuthenticationException.java
      SshAuthenticationException.java
      SystemUnavailableException.java
    periodical/
    qblast/
      parameters/
        Params.java
        QBlastFilter.java
        QBlastFormatObject.java
        QBlastFormatType.java
    ssh/
      SshClient.java
    utils/
      AlignmentsRenderer.java
      Formatter.java
      MailSender.java
      Passwords.java
      Registry.java
      SeqUtil.java
      Utils.java
    web/
      components/
      Configuration.java
      FastaList.java
      HitList.java
      Home.java
      Login.java
      NewSequence.java
      NewUser.java
      PersistenceProviderPage.java
      QueryDetails.java
      ResearcherPage.java
      ResearcherServlet.java
      Rights.java
      SelectionModels.java
      SequenceList.java
      Subhits.java
      UserList.java
      ViewSequence.java
  hibernate.cfg.xml
  log4j.properties
  researcher.properties