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algnmnt_17.txt from eXtensible Genome Data Broker at Krugle

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ALIGN calculates a global alignment of two sequences
 version 2.0uPlease cite: Myers and Miller, CABIOS (1989) 4:11-17
>seq1                                               282 nt vs.
>seq2                                               281 nt
scoring matrix: DNA, gap penalties: -16/-4
96.5% identity;		Global alignment score: 1308

               10        20        30        40        50        60
seq1   GTATTATTCTTCTGGTTTAGCTCATTGGGAGAAATGCAGATAACTTGTTCGATGTATTTA
       ::::: ::::: :::::::::::::::::::::::::::::::::: :::::::::::::
>seq2  GTATTGTTCTTGTGGTTTAGCTCATTGGGAGAAATGCAGATAACTTCTTCGATGTATTTA
               10        20        30        40        50        60

               70        80        90       100       110       120
seq1   CTCAATGAGCTTGATTTTGTTTTCTAGTAGTGATTTTGCTGCTATCAATCTGCTTTAGTG
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  CTCAATGAGTTTGATTTTGTTTTCTAGTAGTGATTTTGCTGCTATCAATCTGCTTTAGTG
               70        80        90       100       110       120

              130       140       150       160       170       180
seq1   ATGATCCATTTTCATATTATATTGTTTGCTTGACATGTTCATGCACTAATAGGAATCTCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  ATGATCCATTTTCATATTATATTGTTTGCTTGACATGTTCATGCACTAATAGGAATCTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
seq1   ATTGTATAATTGTCTTGTAAATTCAGAGTTTGTGTTGTTTTGTTAATAGTGAGCTTTATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  ATTGTATAATTGTCTTGTAAATTCAGAGTTTGTGTTGTTTTGTTAATAGTGAGCTTTATT
              190       200       210       220       230       240

              250       260       270       280  
seq1   CTAAGATCAGTTGATGAAGCAAGCTTTCTTATTTTTCCTCAG
        ::::::::::: ::::: :::::::: :: :::: ::::::
>seq2  GTAAGATCAGTTAATGAAACAAGCTTTGTTCTTTT-CCTCAG
              250       260       270        280 

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eXtensible Genome Data Broker

The xGDB project provides scientists with an online portal for the integration of diverse sources of genomic data. Portals allow researchers to effectively target a specific scientific question by customizing their interactions with available data.

Project homepage: http://sourceforge.net/projects/xgdb
Programming language(s): JavaScript,Perl,PHP
License: other

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