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algnmnt_165.txt from eXtensible Genome Data Broker at Krugle

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ALIGN calculates a global alignment of two sequences
 version 2.0uPlease cite: Myers and Miller, CABIOS (1989) 4:11-17
>seq1                                               115 nt vs.
>seq2                                               115 nt
scoring matrix: DNA, gap penalties: -16/-4
90.6% identity;		Global alignment score: 462

               10        20        30        40          50        
seq1   GTTAGTTGCATATAAACAAGACATCTTATTTTCCCGTATCAGTGTTCAA--ACATGGTTT
       :::::::: ::::::::::::::::::::::  :::::::::::::: :  :::::: ::
>seq2  GTTAGTTGTATATAAACAAGACATCTTATTTCTCCGTATCAGTGTTCTATAACATGGATT
               10        20        30        40        50        60

       60        70        80        90       100       110     
seq1   TGTTCTTTATTCTATGCATCCACAGCTTAAATGCAATTTTGTTTGAACATTGATTAG
       :::::::::::  ::: ::::::: ::::::::::::::::::::::::::::::::
>seq2  TGTTCTTTATT--ATGTATCCACAACTTAAATGCAATTTTGTTTGAACATTGATTAG
               70          80        90       100       110     

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eXtensible Genome Data Broker

The xGDB project provides scientists with an online portal for the integration of diverse sources of genomic data. Portals allow researchers to effectively target a specific scientific question by customizing their interactions with available data.

Project homepage: http://sourceforge.net/projects/xgdb
Programming language(s): JavaScript,Perl,PHP
License: other

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