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algnmnt_140.txt from eXtensible Genome Data Broker at Krugle

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ALIGN calculates a global alignment of two sequences
 version 2.0uPlease cite: Myers and Miller, CABIOS (1989) 4:11-17
>seq1                                               567 nt vs.
>seq2                                               567 nt
scoring matrix: DNA, gap penalties: -16/-4
100.0% identity;		Global alignment score: 2835

               10        20        30        40        50        60
seq1   GTATGGTAAATGAGTTTGATTCTGGGAATAGGTTGTGGTTGTTATAAAGAATGCTCCACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  GTATGGTAAATGAGTTTGATTCTGGGAATAGGTTGTGGTTGTTATAAAGAATGCTCCACT
               10        20        30        40        50        60

               70        80        90       100       110       120
seq1   CAGCAGCGTTGAGCCAGCGCTGTGTTGATGTTTGAAGCACAGCTGCTACATCTGTCAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  CAGCAGCGTTGAGCCAGCGCTGTGTTGATGTTTGAAGCACAGCTGCTACATCTGTCAAAA
               70        80        90       100       110       120

              130       140       150       160       170       180
seq1   ATAGCAACCAAACATATGAGATTTATATATATATTATAAGCAACTGTTTTATTCTGAAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  ATAGCAACCAAACATATGAGATTTATATATATATTATAAGCAACTGTTTTATTCTGAAAT
              130       140       150       160       170       180

              190       200       210       220       230       240
seq1   TTTTAAATCTTGCCTTAATTGTACAAATTCCATAGATCTAGGAGACTATTCTAAGATTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  TTTTAAATCTTGCCTTAATTGTACAAATTCCATAGATCTAGGAGACTATTCTAAGATTCC
              190       200       210       220       230       240

              250       260       270       280       290       300
seq1   ATAGATCTGTAACACTGTGCTACGATTTCTACACTGTTCTAAGATTCCATAGATCTGTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  ATAGATCTGTAACACTGTGCTACGATTTCTACACTGTTCTAAGATTCCATAGATCTGTAA
              250       260       270       280       290       300

              310       320       330       340       350       360
seq1   CACTGTACTACGATTTCTACACTGTTCTAAGATTCCATAGATCATAACTTTTCTAAGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  CACTGTACTACGATTTCTACACTGTTCTAAGATTCCATAGATCATAACTTTTCTAAGATT
              310       320       330       340       350       360

              370       380       390       400       410       420
seq1   TCTACACTGTTACCAATTCCATAGATTGTAGCCTCGATTTCCCAAATTCACAGATCTACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  TCTACACTGTTACCAATTCCATAGATTGTAGCCTCGATTTCCCAAATTCACAGATCTACT
              370       380       390       400       410       420

              430       440       450       460       470       480
seq1   CTAATTTTAAATACATTCCTCCAATTCCCAAACTCACCAATGTTTCTTGATACTTTCAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  CTAATTTTAAATACATTCCTCCAATTCCCAAACTCACCAATGTTTCTTGATACTTTCAAT
              430       440       450       460       470       480

              490       500       510       520       530       540
seq1   TTCAATTTCTTTATTACCCCAAATTCGCTACCCCTATATCTTGCTTCTGAGAATATAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
>seq2  TTCAATTTCTTTATTACCCCAAATTCGCTACCCCTATATCTTGCTTCTGAGAATATAATC
              490       500       510       520       530       540

              550       560       
seq1   GTTTTTTATTACCTTCATTTCCTTCAG
       :::::::::::::::::::::::::::
>seq2  GTTTTTTATTACCTTCATTTCCTTCAG
              550       560       

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eXtensible Genome Data Broker

The xGDB project provides scientists with an online portal for the integration of diverse sources of genomic data. Portals allow researchers to effectively target a specific scientific question by customizing their interactions with available data.

Project homepage: http://sourceforge.net/projects/xgdb
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