index.php from eXtensible Genome Data Broker at Krugle

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<?php
if(empty($SITEDEF_H)){require('SITEDEF.php');}
if(empty($PARAM_H)){require('getPARAM.php');}
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/TWO_COLUMN_HEADER/" . $SSI_QUERYSTRING);
?>

<div id='mainWLS' align="center">
<h2 align="center"><font color="#000000"><big>UCA Example: Gene Model Split</big></font></h1>

<table width="95%" align="center" style="border-color:#999966;border-style:solid;border-width:thin;" >
<tr>
 <td COLSPAN=2 style="background-color:#999966;padding-left:25;"><FONT COLOR='lightgrey'>UCA SHOWCASE</FONT></td>
</tr>
<tr>
 <td> 
   <table style="border-color:#000000;border-style:solid;border-width:thin;" >
     <tr><td><IMG SRC='./ruler.png'></td></tr>
     <tr><td><IMG SRC='./UCA.png'></td></tr>
     <tr><td><IMG SRC='./GBK.png'></td></tr>
     <tr><td><IMG SRC='./CDNA.png'></td></tr>
     <tr><td><IMG SRC='./EST.png'></td></tr>
   </table>
 </td>
 <td valign='TOP'>
<P><B>UCA-At4g32265 / UCA-At4g32270:</B><BR>
The User Contributed Annotations (green gene structures) to the left show how a user of AtGDB 
has provided an updated annotation. These annotations explain the inconsistancy of the current
gene model (At4g32270) with the spliced alignment of ESTs and cDNAs in this region.
By spliting this Gene Model into two annotations, the absence of overlap between the two 
full-length cDNA (gi 26450558 & gi 19715587) is explained. In addition to the support gained 
by the alignment of these cDNA, this UCA is supported and consistent with the presence of three
EST <I>clone pairs</I> (represented by the green box around a pair of ESTs). Via the use of 
GeneSeqer@AtGDB, spliced alignment of the sequences in this region were threaded into two 
reasonable gene structures.
</P>   
 </td>
</tr>
</table>

</div>


<?php
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/STANDARD_FOOTER/" . $SSI_QUERYSTRING);
?>

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eXtensible Genome Data Broker

The xGDB project provides scientists with an online portal for the integration of diverse sources of genomic data. Portals allow researchers to effectively target a specific scientific question by customizing their interactions with available data.

Project homepage: http://sourceforge.net/projects/xgdb
Programming language(s): JavaScript,Perl,PHP
License: other

  CDNA.png
  EST.png
  GBK.png
  UCA.png
  index.php
  ruler.png