Code Search for Developers
 
 
  

build.xml from Re-searcher at Krugle


Show build.xml syntax highlighted

<?xml version="1.0" encoding="UTF-8"?>
<project name="Re-searcher" default="dist">

	<property name="src" location="src" />
	<property name="build" location="context/WEB-INF/classes" />
	<property name="lib" location="context/WEB-INF/lib" />
	<property name="dist" location="dist" />
	<property environment="env"/>


	<target name="init">
		<!-- Create the time stamp -->
		<tstamp />
		<!-- Create the build directory structure used by compile -->
		<mkdir dir="${build}" />
	</target>

	<target name="copy">
		<copy todir="${build}">
			<fileset dir="${src}">
				<exclude name="**/*.java" />
			</fileset>
		</copy>
	</target>

	<target name="compile" depends="init,copy">
		<javac srcdir="${src}" destdir="${build}" debug="true" compiler="javac1.5">
			<classpath>
				<fileset dir="${lib}">
					<include name="**/*.jar" />
				</fileset>
			</classpath>
		</javac>
	</target>

	<target name="dist" depends="clean,compile">
		<!-- Create the distribution directory -->
		<mkdir dir="${dist}" />
		<jar jarfile="${dist}/researcher.jar" basedir="context" excludes="**/servlet-api-2.5.jar" />
	</target>
	
	<target name="distcopy" depends="dist">
		<copy file="${dist}/researcher.jar" todir="/home/posu/projects/Starter/app/researcher/" />		
	</target>

	<target name="clean">
		<!-- Delete the ${build} and ${dist} directory trees -->
		<delete dir="${build}" />
		<delete dir="${dist}" />
	</target>

</project>



See more files for this project here

Re-searcher

Re-searcher is the system for recurrent psiblast searches. It enables timely detection of new proteins on the protein sequence databases. Searches can be done on a local server or at NCBI. It has a user-friendly web interface.

Project homepage: http://sourceforge.net/projects/researcher
Programming language(s): Java,XML
License: other

  context/
    WEB-INF/
      lib/
        activation.jar
        antlr-2.7.6rc1.jar
        asm-attrs.jar
        asm.jar
        bytecode-0.92.jar
        c3p0-0.9.1-pre6.jar
        cglib-2.1.3.jar
        commons-cli.jar
        commons-codec-1.3.jar
        commons-collections-2.1.1.jar
        commons-dbcp-1.1.jar
        commons-email-1.0.jar
        commons-fileupload-1.1.jar
        commons-httpclient-3.0.1.jar
        commons-io-1.1.jar
        commons-logging-1.0.4.jar
        commons-pool-1.1.jar
        derby.jar
        dom4j-1.6.1.jar
        ehcache-1.1.jar
        ejb3-persistence.jar
        ganymed-ssh2-build209.jar
        hibernate-annotations.jar
        hibernate3.jar
        hivemind-1.1.1.jar
        hivemind-lib-1.1.1.jar
        honeycomb.jar
        javassist-3.0.jar
        jericho-html-2.2.jar
        jta.jar
        log4j-1.2.11.jar
        mail.jar
        ognl-2.6.7.jar
        oro-2.0.8.jar
        servlet-api-2.5.jar
        tapestry-4.0.2.jar
        tapestry-annotations-4.0.2.jar
        tapestry-contrib-4.0.2.jar
        tapestry-portlet-4.0.2.jar
        xerces.jar
        xercesImpl.jar
        xml-apis.jar
      Alignments.jwc
      Alignments.properties
      Border.html
      Border.jwc
      Border.properties
      Configuration.html
      Configuration.page
      Configuration.properties
      FastaList.html
      FastaList.page
      HelpBox.html
      HelpBox.jwc
      HelpBox.script
      HitList.html
      HitList.page
      HitList.properties
      Home.html
      Home.page
      InsertNbsp.jwc
      Login.html
      Login.page
      Login.properties
      NewSequence.html
      NewSequence.page
      NewSequence.properties
      NewUser.html
      NewUser.page
      NewUser.properties
      QueryDetails.html
      QueryDetails.page
      QueryDetails.properties
      SequenceList.html
      SequenceList.page
      SequenceList.properties
      Subhits.html
      Subhits.page
      UserList.html
      UserList.page
      UserList.properties
      ViewSequence.html
      ViewSequence.page
      ViewSequence.properties
      researcher.application
      web.xml
    css/
      researcher.css
    images/
      question.png
    static_pages/
      config_help.html
      help.html
  data_tests/
    query1_fastas.xml
    query1_result.html
    query2_fastas.xml
    query2_result.html
  src/
    META-INF/
    researcher/
    hibernate.cfg.xml
    log4j.properties
    researcher.properties
  src_tests/
    researcher/
  build.xml