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QueryDetails.properties from Re-searcher at Krugle


Show QueryDetails.properties syntax highlighted

eValue=Expectation value
sequenceName=Sequence Name
sequence=Sequence
iterations=Maximum number of iterations
period=Search period (days)
wordSize=Word size
submit=Add and Return
add=Add and Stay
matrix=Matrix
costToOpenAGap=Cost to open a gap
costToExtendAGap=Cost to extend a gap
eValueMultipass=Inclusion threshold for multiple iterations
restartFile=Input Alignment File for PSI-BLAST Restart
database=Database
invalidSequenceString=Sequence is not a valid protein sequence
basicOptions=Basic Options
advancedOptions=Advanced Options
secondaryDatabase=Secondary search database
noSecondarySearch=Perform No Secondary Search
commandLineOptions=Additional Command Line Options
tooFewIterations=To perform a secondary search there must be 2 or more iterations
queryAdded=Query added succesfully
remove=remove
searchLocation=Perform Search At
notifyByMail=Notify by mail on new hits
compositionalAdjustments=Compositional adjustments
filters=Choose Filter
lowComplexity=Low complexity
maskLookup=Mask for lookup table only
pssm=PSSM
phiPattern=PHI pattern
primaryDatabaseSearch=Primary Database Search
secondaryDatabaseSearch=Secondary Database Search
queryDesc=Short Description
maxNumberOfHits=Maximum number of hits

queryInfo=Query Information
lastSearchDate=Last Search Date
recentHitsDate=Recent Hit Date
hits=Hits
newHits=New Hits
newSequenceSameParam=Create a New Query Using These Options
stopped=Query stopped because of blast errors



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Re-searcher

Re-searcher is the system for recurrent psiblast searches. It enables timely detection of new proteins on the protein sequence databases. Searches can be done on a local server or at NCBI. It has a user-friendly web interface.

Project homepage: http://sourceforge.net/projects/researcher
Programming language(s): Java,XML
License: other

  lib/
    activation.jar
    antlr-2.7.6rc1.jar
    asm-attrs.jar
    asm.jar
    bytecode-0.92.jar
    c3p0-0.9.1-pre6.jar
    cglib-2.1.3.jar
    commons-cli.jar
    commons-codec-1.3.jar
    commons-collections-2.1.1.jar
    commons-dbcp-1.1.jar
    commons-email-1.0.jar
    commons-fileupload-1.1.jar
    commons-httpclient-3.0.1.jar
    commons-io-1.1.jar
    commons-logging-1.0.4.jar
    commons-pool-1.1.jar
    derby.jar
    dom4j-1.6.1.jar
    ehcache-1.1.jar
    ejb3-persistence.jar
    ganymed-ssh2-build209.jar
    hibernate-annotations.jar
    hibernate3.jar
    hivemind-1.1.1.jar
    hivemind-lib-1.1.1.jar
    honeycomb.jar
    javassist-3.0.jar
    jericho-html-2.2.jar
    jta.jar
    log4j-1.2.11.jar
    mail.jar
    ognl-2.6.7.jar
    oro-2.0.8.jar
    servlet-api-2.5.jar
    tapestry-4.0.2.jar
    tapestry-annotations-4.0.2.jar
    tapestry-contrib-4.0.2.jar
    tapestry-portlet-4.0.2.jar
    xerces.jar
    xercesImpl.jar
    xml-apis.jar
  Alignments.jwc
  Alignments.properties
  Border.html
  Border.jwc
  Border.properties
  Configuration.html
  Configuration.page
  Configuration.properties
  FastaList.html
  FastaList.page
  HelpBox.html
  HelpBox.jwc
  HelpBox.script
  HitList.html
  HitList.page
  HitList.properties
  Home.html
  Home.page
  InsertNbsp.jwc
  Login.html
  Login.page
  Login.properties
  NewSequence.html
  NewSequence.page
  NewSequence.properties
  NewUser.html
  NewUser.page
  NewUser.properties
  QueryDetails.html
  QueryDetails.page
  QueryDetails.properties
  SequenceList.html
  SequenceList.page
  SequenceList.properties
  Subhits.html
  Subhits.page
  UserList.html
  UserList.page
  UserList.properties
  ViewSequence.html
  ViewSequence.page
  ViewSequence.properties
  researcher.application
  web.xml